SMTL ID : 1q66.1

CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2-AMINO-6-AMINOMETHYL-8-phenylsulfanylmethyl-3H-QUINAZOLIN-4-ONE crystallized at pH 5.5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.318, A:C.320, A:C.323, A:H.349 ZN.3: 4 residues within 4Å: Chain B: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.318, B:C.320, B:C.323, B:H.349

2 x KMB: 2-AMINO-6-AMINOMETHYL-8-PHENYLSULFANYLMETHYL-3H-QUINAZOLIN-4-ONE(Non-covalent)

KMB.2: 16 residues within 4Å: Chain A: L.68, N.70, D.102, S.103, Y.106, Q.107, D.156, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, M.260, G.261 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.68, A:N.70, A:D.102, A:Q.107 Hydrogen bonds: A:S.103, A:Y.106, A:Q.203, A:G.230, A:A.232 Salt bridges: A:D.102, A:D.156 pi-Stacking: A:Y.106, A:Y.106 KMB.4: 16 residues within 4Å: Chain B: L.68, N.70, D.102, S.103, Y.106, Q.107, D.156, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, M.260, G.261 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.68, B:N.70, B:D.102, B:Q.107 Hydrogen bonds: B:S.103, B:Q.203, B:G.230, B:A.232 Salt bridges: B:D.102, B:D.156 pi-Stacking: B:Y.106, B:Y.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brenk, R. et al., Crystallographic Study of Inhibitors of tRNA-guanine Transglycosylase Suggests a New Structure-based Pharmacophore for Virtual Screening. J.Mol.Biol. (2004)

Release Date

2004-04-13

Peptides

Queuine tRNA-ribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Queuine tRNA-ribosyltransferase

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