SMTL ID : 1fq5.1

X-ray structure of a cyclic statine inhibitor PD-129,541 bound to yeast proteinase A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN- BMA: beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-BMA.1: 11 residues within 4Å: Chain A: N.68, T.70, I.85, D.101, D.127, D.132, K.133, V.134, V.135, Y.139, Q.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.132

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: I.262, G.267, N.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.269

1 x 0GM: N-[(5S,9S,10S,13S)-9-hydroxy-5,10-bis(2-methylpropyl)-4,7,12,16-tetraoxo-3,6,11,17-tetraazabicyclo[17.3.1]tricosa-1(23),19,21-trien-13-yl]-3-(naphthalen-1-yl)-2-(naphthalen-1-ylmethyl)propanamide(Non-covalent)

0GM.3: 22 residues within 4Å: Chain A: A.13, Q.14, D.33, G.35, I.74, Q.75, Y.76, G.77, T.78, T.112, G.116, F.118, I.121, I.129, Y.193, D.218, G.220, T.221, S.222, M.292, F.294, I.303 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Q.14, A:I.74, A:T.78, A:T.112, A:T.112, A:I.129, A:T.221 Hydrogen bonds: A:G.35, A:Q.75, A:G.77, A:T.78, A:T.78, A:T.78, A:G.220, A:G.220, A:S.222 Water bridges: A:L.223 pi-Stacking: A:F.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cronin, N.B. et al., X-ray structures of five renin inhibitors bound to saccharopepsin: exploration of active-site specificity. J.Mol.Biol. (2000)

Release Date

2000-09-20

Peptides

SACCHAROPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SACCHAROPEPSIN

Related Entries With Identical Sequence