- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.4: 18 residues within 4Å:- Chain A: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139
- Ligands: CMO.5
27 PLIP interactions:26 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:V.69, A:A.72, A:L.90, A:L.90, A:I.100, A:Y.104, A:I.108, A:F.139, A:F.139
- Hydrogen bonds: A:S.93
- Water bridges: A:R.46, A:H.65, A:P.89, A:S.93
- Salt bridges: A:R.46, A:H.65, A:H.94, A:H.98
- pi-Stacking: A:H.94, A:H.98
- Metal complexes: A:H.94, CMO.5
HEM.9: 18 residues within 4Å:- Chain B: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139
- Ligands: CMO.10
27 PLIP interactions:26 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:F.44, B:F.44, B:F.44, B:T.68, B:V.69, B:V.69, B:A.72, B:L.90, B:L.90, B:I.100, B:Y.104, B:I.108, B:F.139, B:F.139
- Hydrogen bonds: B:S.93
- Water bridges: B:R.46, B:H.65, B:P.89, B:S.93
- Salt bridges: B:R.46, B:H.65, B:H.94, B:H.98
- pi-Stacking: B:H.94, B:H.98
- Metal complexes: B:H.94, CMO.10
HEM.14: 18 residues within 4Å:- Chain C: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139
- Ligands: CMO.15
27 PLIP interactions:26 interactions with chain C, 1 Ligand-Ligand interactions- Hydrophobic interactions: C:F.44, C:F.44, C:F.44, C:T.68, C:V.69, C:V.69, C:A.72, C:L.90, C:L.90, C:I.100, C:Y.104, C:I.108, C:F.139, C:F.139
- Hydrogen bonds: C:S.93
- Water bridges: C:R.46, C:H.65, C:P.89, C:S.93
- Salt bridges: C:R.46, C:H.65, C:H.94, C:H.98
- pi-Stacking: C:H.94, C:H.98
- Metal complexes: C:H.94, CMO.15
HEM.19: 18 residues within 4Å:- Chain D: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139
- Ligands: CMO.20
27 PLIP interactions:26 interactions with chain D, 1 Ligand-Ligand interactions- Hydrophobic interactions: D:F.44, D:F.44, D:F.44, D:T.68, D:V.69, D:V.69, D:A.72, D:L.90, D:L.90, D:I.100, D:Y.104, D:I.108, D:F.139, D:F.139
- Hydrogen bonds: D:S.93
- Water bridges: D:R.46, D:H.65, D:P.89, D:S.93
- Salt bridges: D:R.46, D:H.65, D:H.94, D:H.98
- pi-Stacking: D:H.94, D:H.98
- Metal complexes: D:H.94, CMO.20
HEM.24: 18 residues within 4Å:- Chain E: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139
- Ligands: CMO.25
27 PLIP interactions:26 interactions with chain E, 1 Ligand-Ligand interactions- Hydrophobic interactions: E:F.44, E:F.44, E:F.44, E:T.68, E:V.69, E:V.69, E:A.72, E:L.90, E:L.90, E:I.100, E:Y.104, E:I.108, E:F.139, E:F.139
- Hydrogen bonds: E:S.93
- Water bridges: E:R.46, E:H.65, E:P.89, E:S.93
- Salt bridges: E:R.46, E:H.65, E:H.94, E:H.98
- pi-Stacking: E:H.94, E:H.98
- Metal complexes: E:H.94, CMO.25
HEM.29: 18 residues within 4Å:- Chain F: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139
- Ligands: CMO.30
27 PLIP interactions:26 interactions with chain F, 1 Ligand-Ligand interactions- Hydrophobic interactions: F:F.44, F:F.44, F:F.44, F:T.68, F:V.69, F:V.69, F:A.72, F:L.90, F:L.90, F:I.100, F:Y.104, F:I.108, F:F.139, F:F.139
- Hydrogen bonds: F:S.93
- Water bridges: F:R.46, F:H.65, F:P.89, F:S.93
- Salt bridges: F:R.46, F:H.65, F:H.94, F:H.98
- pi-Stacking: F:H.94, F:H.98
- Metal complexes: F:H.94, CMO.30
- 6 x CMO: CARBON MONOXIDE(Non-functional Binders)
CMO.5: 5 residues within 4Å:- Chain A: F.44, H.65, V.69, H.94
- Ligands: HEM.4
No protein-ligand interaction detected (PLIP)CMO.10: 5 residues within 4Å:- Chain B: F.44, H.65, V.69, H.94
- Ligands: HEM.9
No protein-ligand interaction detected (PLIP)CMO.15: 5 residues within 4Å:- Chain C: F.44, H.65, V.69, H.94
- Ligands: HEM.14
No protein-ligand interaction detected (PLIP)CMO.20: 5 residues within 4Å:- Chain D: F.44, H.65, V.69, H.94
- Ligands: HEM.19
No protein-ligand interaction detected (PLIP)CMO.25: 5 residues within 4Å:- Chain E: F.44, H.65, V.69, H.94
- Ligands: HEM.24
No protein-ligand interaction detected (PLIP)CMO.30: 5 residues within 4Å:- Chain F: F.44, H.65, V.69, H.94
- Ligands: HEM.29
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kondrashov, D.A. et al., Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments. Proteins (2008)
- Release Date
- 2001-10-10
- Peptides
- MYOGLOBIN: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 6 x CMO: CARBON MONOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kondrashov, D.A. et al., Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments. Proteins (2008)
- Release Date
- 2001-10-10
- Peptides
- MYOGLOBIN: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A