SMTL ID : 3ase.1

Crystal Structure of Zinc myoglobin soaked with Ru3O cluster

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.52, E.53, A.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.53, A:A.54 SO4.2: 3 residues within 4Å: Chain A: G.125, A.126, D.127 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.126, A:D.127, A:D.127 Water bridges: A:G.125, A:G.125, A:G.125

2 x RUO: OXO-CENTERED TRIRUTHENIUM CLUSTER(Non-covalent)

RUO.3: 1 residues within 4Å: Chain A: H.13 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.13 RUO.4: 1 residues within 4Å: Chain A: H.82 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.82

1 x ZNH: PROTOPORPHYRIN IX CONTAINING ZN(Non-covalent)

ZNH.5: 18 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.73, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:A.72, A:L.73, A:L.90, A:I.100, A:I.100, A:Y.104, A:L.105, A:I.108, A:I.108, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:R.46, A:H.98 Salt bridges: A:R.46, A:H.94, A:H.98 Metal complexes: A:H.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koshiyama, T. et al., Post-Crystal Engineering of Zinc-Substituted Myoglobin to Construct a Long-Lived Photoinduced Charge-Separation System. Angew.Chem.Int.Ed.Engl. (2011)

Release Date

2011-04-27

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

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