- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 3 x XEM: 1-nitrosopropane(Non-covalent)
XEM.2: 8 residues within 4Å:- Chain A: L.30, L.33, F.44, H.65, V.69, H.94, I.108
- Ligands: HEM.1
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.30, A:L.33, A:F.44, A:V.69, A:I.108
XEM.9: 8 residues within 4Å:- Chain B: L.30, L.33, F.44, H.65, V.69, H.94, I.108
- Ligands: HEM.8
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.30, B:L.33, B:F.44, B:V.69, B:I.108
XEM.16: 8 residues within 4Å:- Chain C: L.30, L.33, F.44, H.65, V.69, H.94, I.108
- Ligands: HEM.15
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.30, C:L.33, C:F.44, C:V.69, C:I.108
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: T.52, E.53, A.54
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.53, A:A.54
SO4.4: 3 residues within 4Å:- Chain A: G.125, A.126, D.127
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.126, A:D.127
- Water bridges: A:G.125, A:A.128, A:A.128
SO4.5: 3 residues within 4Å:- Chain A: S.4, G.6, E.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.4
- Water bridges: A:E.7
SO4.6: 8 residues within 4Å:- Chain A: A.16, K.17
- Chain B: A.16, K.17
- Chain C: A.16, K.17
- Ligands: SO4.13, SO4.20
5 PLIP interactions:1 interactions with chain C, 3 interactions with chain B, 1 interactions with chain A- Salt bridges: C:K.17, B:K.17, A:K.17
- Water bridges: B:H.13, B:K.17
SO4.10: 3 residues within 4Å:- Chain B: T.52, E.53, A.54
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.53, B:A.54
SO4.11: 3 residues within 4Å:- Chain B: G.125, A.126, D.127
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.126, B:D.127
- Water bridges: B:G.125, B:A.128, B:A.128
SO4.12: 3 residues within 4Å:- Chain B: S.4, G.6, E.7
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.4
- Water bridges: B:E.7
SO4.13: 8 residues within 4Å:- Chain A: A.16, K.17
- Chain B: A.16, K.17
- Chain C: A.16, K.17
- Ligands: SO4.6, SO4.20
5 PLIP interactions:3 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A- Water bridges: C:H.13, C:K.17
- Salt bridges: C:K.17, B:K.17, A:K.17
SO4.17: 3 residues within 4Å:- Chain C: T.52, E.53, A.54
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.53, C:A.54
SO4.18: 3 residues within 4Å:- Chain C: G.125, A.126, D.127
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:A.126, C:D.127
- Water bridges: C:G.125, C:A.128, C:A.128
SO4.19: 3 residues within 4Å:- Chain C: S.4, G.6, E.7
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.4
- Water bridges: C:E.7
SO4.20: 8 residues within 4Å:- Chain A: A.16, K.17
- Chain B: A.16, K.17
- Chain C: A.16, K.17
- Ligands: SO4.6, SO4.13
5 PLIP interactions:1 interactions with chain B, 3 interactions with chain A, 1 interactions with chain C- Salt bridges: B:K.17, A:K.17, C:K.17
- Water bridges: A:H.13, A:K.17
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.7: 2 residues within 4Å:- Ligands: NA.14, NA.21
1 PLIP interactions:1 interactions with chain A- Water bridges: A:A.20
NA.14: 2 residues within 4Å:- Ligands: NA.7, NA.21
No protein-ligand interaction detected (PLIP)NA.21: 2 residues within 4Å:- Ligands: NA.7, NA.14
1 PLIP interactions:1 interactions with chain B- Water bridges: B:A.20
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Herrera, V.E. et al., Insights into Nitrosoalkane Binding to Myoglobin Provided by Crystallography of Wild-Type and Distal Pocket Mutant Derivatives. Biochemistry (2023)
- Release Date
- 2019-07-17
- Peptides
- Myoglobin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 3 x XEM: 1-nitrosopropane(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 3 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Herrera, V.E. et al., Insights into Nitrosoalkane Binding to Myoglobin Provided by Crystallography of Wild-Type and Distal Pocket Mutant Derivatives. Biochemistry (2023)
- Release Date
- 2019-07-17
- Peptides
- Myoglobin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A