SMTL ID : 7a45.1

CO-bound sperm whale myoglobin measured by serial femtosecond crystallography

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 Ligands: CMO.3 22 PLIP interactions: 21 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:V.69, A:A.72, A:L.90, A:L.90, A:I.100, A:I.100, A:I.100, A:Y.104, A:I.108, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:S.93 Salt bridges: A:R.46, A:H.65, A:H.94, A:H.98 pi-Stacking: A:H.98 Metal complexes: A:H.94, CMO.3

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: A.58, S.59, E.60, D.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.59, A:E.60, A:D.61

1 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.3: 5 residues within 4Å: Chain A: F.44, H.65, V.69, H.94 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mehrabi, P. et al., Serial femtosecond and serial synchrotron crystallography can yield data of equivalent quality: A systematic comparison. Sci Adv (2021)

Release Date

2021-04-07

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

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