SMTL ID : 1mnz.1

Atomic structure of Glucose isomerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.99 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: E.181, E.217, D.245, D.287 Ligands: TRS.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.181, A:E.217, A:D.245, A:D.287 MG.5: 5 residues within 4Å: Chain B: E.181, E.217, D.245, D.287 Ligands: TRS.7 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.181, B:E.217, B:D.245, B:D.287 MG.9: 5 residues within 4Å: Chain C: E.181, E.217, D.245, D.287 Ligands: TRS.11 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.181, C:E.217, C:D.245, C:D.287 MG.13: 5 residues within 4Å: Chain D: E.181, E.217, D.245, D.287 Ligands: TRS.15 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.181, D:E.217, D:D.245, D:D.287

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.217, H.220, D.255, D.257 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.217, A:H.220, A:D.255, A:D.257, H2O.1 CA.6: 4 residues within 4Å: Chain B: E.217, H.220, D.255, D.257 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.217, B:H.220, B:D.255, B:D.257, H2O.17 CA.10: 4 residues within 4Å: Chain C: E.217, H.220, D.255, D.257 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.217, C:H.220, C:D.255, C:D.257, H2O.33 CA.14: 4 residues within 4Å: Chain D: E.217, H.220, D.255, D.257 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.217, D:H.220, D:D.255, D:D.257, H2O.49

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 10 residues within 4Å: Chain A: W.16, H.54, F.94, W.137, E.181, E.217, H.220, D.245, D.287 Ligands: MG.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.16, A:D.287 Water bridges: A:T.90, A:T.91, A:N.215, A:H.220 TRS.7: 10 residues within 4Å: Chain B: W.16, H.54, F.94, W.137, E.181, E.217, H.220, D.245, D.287 Ligands: MG.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:W.16, B:D.287 Water bridges: B:T.90, B:T.91, B:N.215, B:H.220 TRS.11: 10 residues within 4Å: Chain C: W.16, H.54, F.94, W.137, E.181, E.217, H.220, D.245, D.287 Ligands: MG.9 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:W.16, C:D.287 Water bridges: C:T.90, C:T.91, C:N.215, C:H.220 TRS.15: 10 residues within 4Å: Chain D: W.16, H.54, F.94, W.137, E.181, E.217, H.220, D.245, D.287 Ligands: MG.13 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:W.16, D:D.287 Water bridges: D:T.90, D:T.91, D:N.215, D:H.220

4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.4: 6 residues within 4Å: Chain A: W.16, H.54, D.57, F.94, T.95 Chain C: F.26 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.16, A:F.94, A:T.95 MRD.8: 6 residues within 4Å: Chain B: W.16, H.54, D.57, F.94, T.95 Chain D: F.26 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.16, B:F.94, B:T.95 MRD.12: 6 residues within 4Å: Chain A: F.26 Chain C: W.16, H.54, D.57, F.94, T.95 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.16, C:F.94, C:T.95 MRD.16: 6 residues within 4Å: Chain B: F.26 Chain D: W.16, H.54, D.57, F.94, T.95 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:W.16, D:F.94, D:T.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nowak, E. et al., Atomic structure of Glucose isomerase. To be published

Release Date

2002-09-25

Peptides

Xylose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Xylose isomerase

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