SMTL ID : 1rsg.1

Crystal structure of the polyamine oxidase Fms1 from yeast

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 38 residues within 4Å: Chain A: I.14, G.15, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.45, G.46, R.47, L.48, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, L.294, K.296, W.440, Y.445, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.294 Hydrogen bonds: A:G.17, A:A.19, A:A.40, A:R.41, A:G.45, A:R.47, A:A.63, A:S.64, A:W.65, A:W.65, A:Y.201, A:V.223, A:V.223, A:E.479, A:E.479, A:G.487, A:A.489 Water bridges: A:I.18, A:G.20, A:G.46, A:R.47, A:R.47, A:L.48 Salt bridges: A:R.47, A:R.47 pi-Stacking: A:Y.445, A:Y.450 FAD.2: 36 residues within 4Å: Chain B: I.14, G.15, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.45, G.46, R.47, L.48, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, L.294, W.440, Y.445, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:L.294 Hydrogen bonds: B:A.16, B:A.19, B:A.40, B:R.41, B:R.41, B:G.45, B:R.47, B:A.63, B:S.64, B:W.65, B:W.65, B:Y.201, B:V.223, B:V.223, B:E.479, B:G.487, B:A.489 Water bridges: B:G.17, B:I.18, B:G.20, B:G.46, B:R.47, B:R.47, B:L.48, B:H.67 Salt bridges: B:R.47, B:R.47 pi-Stacking: B:Y.450

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Q. et al., Crystal structures of fms1 and its complex with spermine reveal substrate specificity. J.Mol.Biol. (2005)

Release Date

2005-02-15

Peptides

FMS1 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FMS1 protein

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