SMTL ID : 1ry0.2 (1 other biounit)

Structure of prostaglandin F synthase with prostaglandin D2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280 Ligands: PG2.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:K.270, A:K.270, A:S.271, A:Y.272, A:N.273, A:N.280, A:N.280 Water bridges: A:S.217, A:A.218, A:A.218 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

1 x PG2: PROSTAGLANDIN D2(Non-covalent)

PG2.2: 17 residues within 4Å: Chain A: Y.24, L.54, Y.55, W.86, H.117, M.120, S.129, N.167, Y.216, W.227, F.306, S.308, F.311, Y.317, P.318, Y.319 Ligands: NAP.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.54, A:Y.55, A:N.167, A:W.227, A:W.227, A:W.227, A:W.227, A:F.306, A:F.306, A:F.306, A:Y.317, A:P.318, A:Y.319 Hydrogen bonds: A:Y.55, A:H.117, A:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komoto, J. et al., Crystal structure of human prostaglandin F synthase (AKR1C3). Biochemistry (2004)

Release Date

2004-11-02

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Aldo-keto reductase family 1 member C3

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