SMTL ID : 2f38.1

Crystal structure of prostaglandin F synathase containing bimatoprost

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280 Ligands: 15M.2 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:D.50, A:S.166, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:Q.222, A:Q.222, A:K.270, A:S.271, A:Y.272, A:N.273, A:Q.279, A:N.280 Water bridges: A:Y.55, A:S.217, A:A.218, A:A.218, A:S.221, A:T.251, A:R.276 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

1 x 15M: (5Z)-7-{(1R,2R,3R,5S)-3,5-DIHYDROXY-2-[(1E,3S)-3-HYDROXY-5-PHENYLPENT-1-ENYL]CYCLOPENTYL}-N-ETHYLHEPT-5-ENAMIDE(Non-covalent)

15M.2: 15 residues within 4Å: Chain A: Y.24, W.86, S.87, S.118, M.120, L.122, S.129, F.139, N.167, W.227, F.306, F.311, P.318, Y.319 Ligands: NAP.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.86, A:M.120, A:L.122, A:L.122, A:F.139, A:W.227, A:F.306, A:F.306, A:P.318, A:Y.319 Hydrogen bonds: A:Y.24, A:S.129, A:Y.216, A:Y.216 Water bridges: A:Y.24 pi-Stacking: A:F.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komoto, J. et al., Prostaglandin F2alpha formation from prostaglandin H2 by prostaglandin F synthase (PGFS): crystal structure of PGFS containing bimatoprost. Biochemistry (2006)

Release Date

2006-10-31

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C3

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