SMTL ID : 4dbw.2 (1 other biounit)

Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 (AKR1C3) in complex with NADP+ and 2'-desmethyl-indomethacin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, F.306 Ligands: 511.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.216, A:F.306 Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:Q.222, A:L.268, A:K.270, A:K.270, A:S.271, A:Y.272, A:Q.279, A:N.280 Water bridges: A:S.217, A:A.218, A:A.218, A:S.221, A:R.276 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

2 x 511: [1-(4-chlorobenzoyl)-5-methoxy-1H-indol-3-yl]acetic acid(Non-covalent)

511.2: 16 residues within 4Å: Chain A: Y.24, L.54, Y.55, W.86, H.117, S.118, M.120, N.167, Y.216, R.226, W.227, F.306, P.318, Y.319 Ligands: NAP.1, 511.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.54, A:L.54, A:N.167, A:W.227, A:W.227, A:F.306, A:F.306 Hydrogen bonds: A:Y.55, A:R.226 Water bridges: A:Y.24 Salt bridges: A:K.84, A:H.117 pi-Stacking: A:H.117 511.3: 10 residues within 4Å: Chain A: W.86, M.120, L.128, S.129, W.227, F.306, N.307, S.308, F.311 Ligands: 511.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.86, A:W.227, A:W.227, A:F.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liedtke, A.J. et al., Development of potent and selective indomethacin analogues for the inhibition of AKR1C3 (Type 5 17 beta-hydroxysteroid dehydrogenase/prostaglandin F synthase) in castrate-resistant prostate cancer. J.Med.Chem. (2013)

Release Date

2013-03-06

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Aldo-keto reductase family 1 member C3

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