SMTL ID : 9ffd.1 (1 other biounit)

STRUCTURE OF ALDO-KETO REDUCTASE 1C3 (AKR1C3) IN COMPLEX WITH AN INHIBITOR MEDS765

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 31 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, T.251, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, F.306 Ligands: 01.2 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:T.23, A:Y.24, A:Y.24, A:D.50, A:N.167, A:Q.190, A:Y.216, A:S.217, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:K.270, A:K.270, A:S.271, A:S.271, A:Y.272, A:Q.279, A:N.280 Water bridges: A:A.218, A:A.218, A:R.276, A:Q.279 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

1 x 01: ~{N}-(4-bromanyl-2-methyl-phenyl)-2-[methyl-[(8-methyl-7-oxidanyl-2-oxidanylidene-chromen-4-yl)methyl]amino]ethanamide

01.2: 17 residues within 4Å: Chain A: Y.24, L.54, Y.55, K.84, W.86, H.117, M.120, N.167, Y.216, D.224, W.227, F.306, F.311, Y.317, P.318, Y.319 Ligands: NAP.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.54, A:Y.55, A:W.227, A:F.311 Hydrogen bonds: A:Y.24, A:Y.55, A:H.117 Water bridges: A:W.227 pi-Stacking: A:F.306 pi-Cation interactions: A:W.227, A:W.227

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: R.91, K.123, P.124, I.138, F.139, D.140, I.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.140, A:I.141 EDO.4: 9 residues within 4Å: Chain A: Q.6, P.17, V.18, L.19, G.45, F.46, R.47, H.48, F.284 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.6, A:V.18, A:L.19, A:R.47, A:H.48 EDO.5: 5 residues within 4Å: Chain A: A.44, R.278, V.281, Q.282, E.285 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: P.92, E.93, E.149, A.150, K.153 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.95, A:A.150

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.7: 8 residues within 4Å: Chain A: C.7, F.15, P.17, E.77, D.78, I.79, F.80, D.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.77 Water bridges: A:F.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pippione, A.C. et al., AI Based Discovery of a New AKR1C3 Inhibitor for Anticancer Applications. Acs Med.Chem.Lett. (2024)

Release Date

2024-08-21

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C3

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