SMTL ID : 1ry8.2 (1 other biounit)

Prostaglandin F synthase complexed with NADPH and rutin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280 Ligands: RUT.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:K.270, A:S.271, A:Y.272, A:N.280, A:N.280 Water bridges: A:A.218, A:A.218, A:R.276, A:R.276, A:Q.279, A:Q.279 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216

1 x RUT: RUTIN(Non-covalent)

RUT.2: 18 residues within 4Å: Chain A: Y.24, L.54, Y.55, H.117, M.120, S.129, N.167, Y.216, Q.222, D.224, R.226, W.227, H.304, F.306, S.308, F.311, Y.319 Ligands: NDP.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.54, A:D.224 Hydrogen bonds: A:Y.55, A:Y.55, A:S.129, A:N.167, A:Y.216, A:D.224, A:R.226, A:H.304, A:Y.319 Water bridges: A:Q.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komoto, J. et al., Crystal structure of human prostaglandin F synthase (AKR1C3). Biochemistry (2004)

Release Date

2004-11-02

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Aldo-keto reductase family 1 member C3

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