SMTL ID : 1yci.1

Factor inhibiting HIF-1 alpha in complex with N-(carboxycarbonyl)-D-phenylalanine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.199, D.201, H.279 Ligands: NDF.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.199, A:D.201, A:H.279, H2O.2 FE2.7: 4 residues within 4Å: Chain B: H.199, D.201, H.279 Ligands: NDF.11 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.199, B:D.201, B:H.279, H2O.6

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.142 Salt bridges: A:R.138 SO4.3: 5 residues within 4Å: Chain A: R.143, E.192, G.193, L.285, N.286 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.192, A:E.192, A:N.286 Salt bridges: A:R.143 SO4.4: 4 residues within 4Å: Chain A: K.107, D.237, R.320, K.324 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.237 Salt bridges: A:K.107, A:R.320, A:K.324 SO4.8: 4 residues within 4Å: Chain B: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.141, B:E.142 Salt bridges: B:R.138 SO4.9: 5 residues within 4Å: Chain B: R.143, E.192, G.193, L.285, N.286 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.192, B:N.286 Salt bridges: B:R.143 SO4.10: 4 residues within 4Å: Chain B: K.107, D.237, R.320, K.324 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:K.107, B:R.320, B:K.324

4 x NDF: N-(CARBOXYCARBONYL)-D-PHENYLALANINE(Non-covalent)

NDF.5: 15 residues within 4Å: Chain A: Y.145, Q.147, L.186, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Ligands: FE2.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.186, A:L.188, A:W.296 Hydrogen bonds: A:Y.145, A:T.196, A:T.196, A:N.205, A:N.294 Salt bridges: A:K.214, A:H.279 NDF.6: 9 residues within 4Å: Chain A: P.221, D.222, F.224, E.225, K.315, M.319 Chain B: E.335, L.339, T.342 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:L.339, B:T.342, A:F.224, A:E.225, A:K.315 Water bridges: B:E.335, A:K.315 Hydrogen bonds: A:E.225 Salt bridges: A:K.315 NDF.11: 15 residues within 4Å: Chain B: Y.145, Q.147, L.186, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Ligands: FE2.7 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.186, B:L.188, B:W.296 Hydrogen bonds: B:Y.145, B:T.196, B:N.205, B:N.294 Salt bridges: B:K.214, B:H.279 NDF.12: 9 residues within 4Å: Chain A: E.335, L.339, T.342 Chain B: P.221, D.222, F.224, E.225, K.315, M.319 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.224, B:E.225, B:K.315, A:L.339, A:T.342 Hydrogen bonds: B:E.225, B:E.225 Water bridges: B:K.315 Salt bridges: B:K.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McDonough, M.A. et al., Selective inhibition of factor inhibiting hypoxia-inducible factor. J.Am.Chem.Soc. (2005)

Release Date

2005-05-31

Peptides

Hypoxia-inducible factor 1 alpha inhibitor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypoxia-inducible factor 1 alpha inhibitor

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