SMTL ID : 7a1l.1

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-methyl-2-oxoglutarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x ROQ: (3~{S})-3-methyl-2-oxidanylidene-pentanedioic acid(Non-covalent)

ROQ.1: 15 residues within 4Å: Chain A: Y.145, Q.147, L.186, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Ligands: ZN.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.188, A:I.281 Hydrogen bonds: A:Y.145, A:T.196, A:H.199, A:N.205, A:N.294, A:W.296 Water bridges: A:T.196, A:K.214 Salt bridges: A:K.214, A:H.279

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.199, D.201, H.279, W.296 Ligands: ROQ.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.199, A:D.201, A:H.279

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.142 Salt bridges: A:R.138 SO4.4: 6 residues within 4Å: Chain A: R.33, R.143, E.192, G.193, L.285, N.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.286 Salt bridges: A:R.143 SO4.5: 4 residues within 4Å: Chain A: P.221, D.222, K.311, A.312 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.312 SO4.6: 2 residues within 4Å: Chain A: R.120, E.122 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakashima, Y. et al., 2-Oxoglutarate derivatives can selectively enhance or inhibit the activity of human oxygenases. Nat Commun (2021)

Release Date

2021-08-25

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypoxia-inducible factor 1-alpha inhibitor

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