SMTL ID : 6ruj.1

Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)3-hydroxy-Leu peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.199, D.201, H.279, W.296 Chain B: X.14 Ligands: OGA.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.199, A:D.201, A:H.279 ZN.6: 6 residues within 4Å: Chain C: H.199, D.201, H.279, W.296 Chain D: X.14 Ligands: OGA.7 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.199, C:D.201, C:H.279

2 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 15 residues within 4Å: Chain A: Y.145, Q.147, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Chain B: X.14 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.145, A:T.196, A:T.196, A:N.205, A:N.294, A:W.296 Salt bridges: A:K.214, A:H.279 OGA.7: 15 residues within 4Å: Chain C: Y.145, Q.147, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Chain D: X.14 Ligands: ZN.6 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Y.145, C:T.196, C:T.196, C:N.205, C:N.294, C:W.296 Salt bridges: C:K.214, C:H.279

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: I.135, R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.142 Salt bridges: A:R.138 SO4.4: 4 residues within 4Å: Chain A: D.222, K.311, A.312, H.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.312, A:H.313 SO4.5: 3 residues within 4Å: Chain A: R.33, H.98, R.143 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.33, A:H.98, A:R.143 SO4.8: 5 residues within 4Å: Chain C: I.135, R.138, G.140, E.141, E.142 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.141, C:E.142, C:E.142 Salt bridges: C:R.138 SO4.9: 4 residues within 4Å: Chain C: D.222, K.311, A.312, H.313 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.312, C:H.313 SO4.10: 3 residues within 4Å: Chain C: R.33, H.98, R.143 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:R.33, C:H.98, C:R.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, H. et al., A human protein hydroxylase that accepts D-residues. Commun Chem (2020)

Release Date

2020-07-08

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AC
CONSENSUS ANKYRIN REPEAT DOMAIN-(D)3-hydroxy-Leu: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Hypoxia-inducible factor 1-alpha inhibitor

CONSENSUS ANKYRIN REPEAT DOMAIN-(D)3-hydroxy-Leu

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