SMTL ID : 6ha6.1

Factor Inhibiting HIF (FIH) in complex with zinc, NOG and TRPV3 (220-246)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-2-2-mer

Ligands

2 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.1: 13 residues within 4Å: Chain A: Y.145, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Ligands: ZN.9 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.196, A:T.196, A:N.205, A:N.294 Salt bridges: A:K.214, A:H.279 OGA.10: 13 residues within 4Å: Chain C: Y.145, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Ligands: ZN.18 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Y.145, C:T.196, C:D.201, C:N.205, C:N.294 Water bridges: C:D.201 Salt bridges: C:K.214, C:H.279

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.142 Salt bridges: A:R.138 SO4.3: 2 residues within 4Å: Chain A: K.311, A.312 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.312 Water bridges: A:H.313 SO4.4: 5 residues within 4Å: Chain A: R.143, E.192, G.193, L.285, N.286 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.33, A:E.192, A:E.192, A:N.286 Water bridges: A:R.143 Salt bridges: A:R.143 SO4.5: 2 residues within 4Å: Chain A: Q.148, T.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.148 Water bridges: A:S.91 SO4.11: 4 residues within 4Å: Chain C: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.141, C:E.142 Salt bridges: C:R.138 SO4.12: 2 residues within 4Å: Chain C: K.311, A.312 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.312 Water bridges: C:H.313 SO4.13: 5 residues within 4Å: Chain C: R.143, E.192, G.193, L.285, N.286 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.33, C:E.192, C:N.286 Water bridges: C:R.143 Salt bridges: C:R.143 SO4.14: 2 residues within 4Å: Chain C: Q.148, T.149 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.148 Water bridges: C:S.91

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: K.99, L.101, Y.230, S.240, Q.241, V.242, D.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.230, A:Y.230 Water bridges: A:F.244 GOL.7: 2 residues within 4Å: Chain A: F.162, W.167 No protein-ligand interaction detected (PLIP) GOL.8: 3 residues within 4Å: Chain A: R.17, R.44, T.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.44 Water bridges: A:R.17, A:R.44 GOL.15: 7 residues within 4Å: Chain C: K.99, L.101, Y.230, S.240, Q.241, V.242, D.243 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.230 Water bridges: C:F.244 GOL.16: 2 residues within 4Å: Chain C: F.162, W.167 No protein-ligand interaction detected (PLIP) GOL.17: 3 residues within 4Å: Chain C: R.17, R.44, T.65 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.44 Water bridges: C:R.17, C:R.44

2 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: H.199, D.201, H.279 Ligands: OGA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.199, A:D.201, A:H.279, H2O.2 ZN.18: 4 residues within 4Å: Chain C: H.199, D.201, H.279 Ligands: OGA.10 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.199, C:D.201, C:H.279, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leissing, T.M. et al., Factor Inhibiting HIF (FIH) in complex with zinc, NOG and TRPV3 (220-246). To Be Published

Release Date

2019-08-28

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AC
Transient receptor potential cation channel subfamily V member 3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
D

D
D

Hypoxia-inducible factor 1-alpha inhibitor

Transient receptor potential cation channel subfamily V member 3

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