SMTL ID : 8ii0.1

FACTOR INHIBITING HIF-1 ALPHA in complex with (5-(3-(3-chlorophenyl)isoxazol-5-yl)-3-hydroxypicolinoyl)glycine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x P5I: 2-[[5-[3-(3-chlorophenyl)-1,2-oxazol-5-yl]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid(Non-covalent)

P5I.1: 16 residues within 4Å: Chain A: Y.102, Y.103, D.104, K.106, Y.145, Q.147, L.188, T.196, H.199, D.201, F.207, K.214, H.279, I.281, W.296 Ligands: ZN.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.102, A:Y.102, A:Y.102, A:D.104 Hydrogen bonds: A:Y.145, A:Q.147, A:Q.147, A:R.238 Salt bridges: A:K.214 pi-Stacking: A:H.199 pi-Cation interactions: A:R.238 Halogen bonds: A:K.106

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: G.155, R.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.156 GOL.3: 7 residues within 4Å: Chain A: K.99, L.101, Y.230, S.240, Q.241, V.242, D.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.240 Water bridges: A:D.243

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: H.199, D.201, H.279 Ligands: P5I.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.199, A:D.201, A:H.279, H2O.1

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.142 Salt bridges: A:R.138 SO4.6: 2 residues within 4Å: Chain A: K.311, A.312 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.312 Water bridges: A:D.222, A:D.222, A:H.313 SO4.7: 5 residues within 4Å: Chain A: R.143, E.192, G.193, L.285, N.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.192, A:N.286 Salt bridges: A:R.143 SO4.8: 2 residues within 4Å: Chain A: R.17, R.44 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.44 SO4.9: 5 residues within 4Å: Chain A: K.107, E.202, D.237, R.320, K.324 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.107, A:R.320, A:K.324 SO4.10: 5 residues within 4Å: Chain A: P.221, D.222, E.225, A.312, K.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.225 SO4.11: 3 residues within 4Å: Chain A: T.97, H.98, R.143 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.97, A:H.98 Water bridges: A:R.33 Salt bridges: A:H.98, A:R.143 SO4.12: 2 residues within 4Å: Chain A: Q.148, N.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.148, A:N.151 Water bridges: A:T.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakashima, Y. et al., A small-molecule FIH inhibitor binding to a tyrosine-flip pocket ameliorates obesity and MAFLD. To Be Published

Release Date

2024-02-28

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypoxia-inducible factor 1-alpha inhibitor

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