SMTL ID : 2cfg.1

AGAO in complex with wc4d3 (Ru-wire inhibitor, 4-carbon linker, delta enantiomer, data set 3)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.429, H.431, H.590 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.8, H2O.9 CU.10: 3 residues within 4Å: Chain B: H.429, H.431, H.590 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.24, H2O.25

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: R.47, D.438, M.439, F.444, D.579, I.580 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.579, A:I.580, A:I.580 NA.11: 6 residues within 4Å: Chain B: R.47, D.438, M.439, F.444, D.579, I.580 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.439, B:I.580

2 x R4A: BIS[1H,1'H-2,2'-BIPYRIDINATO(2-)-KAPPA~2~N~1~,N~1'~]{3-[4-(1,10-DIHYDRO-1,10-PHENANTHROLIN-4-YL-KAPPA~2~N~1~,N~10~)BUTOXY]-N,N-DIMETHYLANILINATO(2-)}RUTHENIUM(Covalent)(Non-covalent)

R4A.3: 24 residues within 4Å: Chain A: E.100, E.101, F.103, A.133, P.134, L.135, W.166, Y.294, D.296, Y.300, Y.305, R.334, T.376, I.377, G.378, N.379, Y.380, F.405 Chain B: S.354, D.355, L.356, W.357, G.359, N.361 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: A:E.100, A:F.103, A:F.103, A:A.133, A:W.166, A:Y.305, A:Y.305, A:I.377, B:L.356, B:L.356 R4A.12: 24 residues within 4Å: Chain A: S.354, D.355, L.356, W.357, G.359, N.361 Chain B: E.100, E.101, F.103, A.133, P.134, L.135, W.166, Y.294, D.296, Y.300, Y.305, R.334, T.376, I.377, G.378, N.379, Y.380, F.405 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: B:E.100, B:E.100, B:F.103, B:F.103, B:F.103, B:F.103, B:A.133, B:W.166, B:Y.305, B:Y.305, B:I.377, A:L.356

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: L.125, V.157, D.159, H.168, V.195, P.196, A.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.159, A:V.195 Water bridges: A:V.195 GOL.5: 7 residues within 4Å: Chain A: Q.517, L.588, D.603, T.604 Chain B: H.513, K.608, R.610 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.603, A:T.604, A:T.604, B:K.608, B:K.608, B:R.610 GOL.6: 6 residues within 4Å: Chain A: D.442, G.443, F.444, T.445, N.497, E.499 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.444, A:T.445, A:T.445, A:N.497 GOL.7: 9 residues within 4Å: Chain A: W.347, N.366, Y.389, D.391, T.393, E.395, K.608 Chain B: V.602, T.604 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.366, A:K.608 Water bridges: A:W.347, A:D.391, A:K.608 GOL.9: 8 residues within 4Å: Chain A: E.345, W.347, R.368, K.399 Chain B: D.346, W.347, G.348 Ligands: SO4.13 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Water bridges: B:D.346, B:W.347, A:H.343 Hydrogen bonds: A:E.345, A:R.368, A:K.399, A:K.399 GOL.14: 15 residues within 4Å: Chain B: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.531, B:T.552, B:S.560, B:A.563 Water bridges: B:A.533, B:F.555 GOL.15: 7 residues within 4Å: Chain B: L.125, V.157, D.159, H.168, V.195, P.196, A.197 No protein-ligand interaction detected (PLIP) GOL.16: 7 residues within 4Å: Chain A: H.513, K.608, R.610 Chain B: Q.517, L.588, D.603, T.604 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.603, B:D.603, B:T.604, A:R.610 Water bridges: B:Q.517, B:D.603, B:D.603 GOL.17: 6 residues within 4Å: Chain B: D.442, G.443, F.444, T.445, N.497, E.499 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.444, B:T.445, B:T.445, B:N.497 GOL.18: 9 residues within 4Å: Chain A: D.346, W.347, G.348, R.365 Chain B: E.345, W.347, R.368, K.399 Ligands: SO4.8 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.345, B:R.368, B:K.399, B:K.399 Water bridges: A:W.347, A:I.349 GOL.19: 9 residues within 4Å: Chain A: V.602, T.604 Chain B: W.347, N.366, Y.389, D.391, T.393, E.395, K.608 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.366, A:V.602 Water bridges: B:W.347, B:D.391, B:D.391, B:T.393, B:K.608

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 10 residues within 4Å: Chain A: G.348, I.349, R.365 Chain B: D.314, C.315, L.316, H.343, E.345, Y.385 Ligands: GOL.18 9 PLIP interactions: 2 interactions with chain A, 7 interactions with chain B Water bridges: A:I.349, B:H.343, B:H.343, B:S.372, B:Y.385, B:Y.385 Salt bridges: A:R.365, B:H.343 Hydrogen bonds: B:L.316 SO4.13: 10 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, E.345, Y.385 Chain B: G.348, I.349, R.365 Ligands: GOL.9 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.316, B:I.349 Water bridges: A:H.343, A:H.343, A:Y.385, A:K.399 Salt bridges: A:H.343, B:R.365

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langley, D.B. et al., Enantiomer-Specific Binding of Ruthenium(II) Molecular Wires by the Amine Oxidase of Arthrobacter Globiformis. J.Am.Chem.Soc. (2008)

Release Date

2007-05-01

Peptides

PHENYLETHYLAMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PHENYLETHYLAMINE OXIDASE

Related Entries With Identical Sequence