- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-trimer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 2 x OX4: 3-FLUORO-4-HYDROXYBENZALDEHYDE O-(CYCLOHEXYLCARBONYL)OXIME(Non-covalent)(Covalent)
OX4.3: 12 residues within 4Å:- Chain A: P.1, M.2, K.32, Y.36, H.62, S.63, I.64, M.101, V.106
- Chain B: Y.95, N.97
- Ligands: GOL.4
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:M.2, A:H.62, A:I.64, A:I.64, A:V.106, B:Y.95, B:Y.95
- Hydrogen bonds: A:K.32, A:I.64
- Salt bridges: A:K.32
OX4.11: 12 residues within 4Å:- Chain A: Y.95, N.97
- Chain C: P.1, M.2, K.32, Y.36, H.62, S.63, I.64, M.101, V.106
- Ligands: GOL.12
10 PLIP interactions:8 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:M.2, C:K.32, C:H.62, C:I.64, C:V.106, A:Y.95, A:Y.95
- Hydrogen bonds: C:P.1, C:I.64
- Salt bridges: C:K.32
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 8 residues within 4Å:- Chain A: P.1, M.2, H.62, S.63, V.106
- Chain B: Y.95, N.97
- Ligands: OX4.3
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.62, A:I.64, B:N.97
GOL.5: 1 residues within 4Å:- Chain A: A.114
2 PLIP interactions:2 interactions with chain A- Water bridges: A:F.113, A:A.114
GOL.6: 3 residues within 4Å:- Chain A: D.92
- Chain C: N.109
- Ligands: IPA.14
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.92
GOL.8: 8 residues within 4Å:- Chain B: P.1, M.2, H.62, S.63, I.64, M.101, V.106
- Chain C: N.97
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:N.97, C:N.97, B:P.1, B:I.64
GOL.12: 9 residues within 4Å:- Chain A: Y.95, N.97
- Chain C: P.1, M.2, H.62, S.63, I.64, V.106
- Ligands: OX4.11
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:P.1, C:H.62, C:I.64, A:N.97
GOL.13: 1 residues within 4Å:- Chain C: A.114
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:A.114
- 3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.14: 4 residues within 4Å:- Chain C: Q.35, Y.36, W.108
- Ligands: GOL.6
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:Y.36
- Water bridges: A:D.92, A:D.92
IPA.15: 6 residues within 4Å:- Chain C: D.16, G.17, F.18, L.19, S.20
- Ligands: IPA.16
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.19, C:L.19
- Hydrogen bonds: C:G.17, C:F.18
IPA.16: 5 residues within 4Å:- Chain C: G.17, F.18, L.19, S.20
- Ligands: IPA.15
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.19
- Hydrogen bonds: C:G.17, C:G.17, C:L.19, C:S.20
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Crichlow, G.V. et al., Alternative chemical modifications reverse the binding orientation of a pharmacophore scaffold in the active site of macrophage migration inhibitory factor. J.Biol.Chem. (2007)
- Release Date
- 2007-06-05
- Peptides
- Macrophage migration inhibitory factor: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-trimer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 2 x OX4: 3-FLUORO-4-HYDROXYBENZALDEHYDE O-(CYCLOHEXYLCARBONYL)OXIME(Non-covalent)(Covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Crichlow, G.V. et al., Alternative chemical modifications reverse the binding orientation of a pharmacophore scaffold in the active site of macrophage migration inhibitory factor. J.Biol.Chem. (2007)
- Release Date
- 2007-06-05
- Peptides
- Macrophage migration inhibitory factor: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C