SMTL ID : 2pob.1

PPARgamma Ligand binding domain complexed with a farglitazar analogue gw4709

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x GW4: N-[(2S)-2-[(2-BENZOYLPHENYL)AMINO]-3-{4-[2-(5-METHYL-2-PHENYL-1,3-OXAZOL-4-YL)ETHOXY]PHENYL}PROPYL]ACETAMIDE(Non-covalent)

GW4.1: 16 residues within 4Å: Chain A: R.75, F.77, C.80, Q.81, S.84, H.118, I.121, Y.122, I.136, M.143, F.155, F.158, M.159, H.244, L.264, Y.268 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.77, A:F.77, A:F.77, A:Q.81, A:I.121, A:I.121, A:Y.122, A:I.136, A:F.155, A:F.158, A:L.264 Hydrogen bonds: A:S.84, A:Y.122, A:Y.268

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain B: G.79, C.80, I.136, S.137 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trump, R.P. et al., Cocrystal structure guided array synthesis of PPARgamma inverse agonists. BIOORG.MED.CHEM.LETT. (2007)

Release Date

2008-03-18

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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