SMTL ID : 8dk4.1

Peroxisome proliferator-activated receptor gamma in complex with VSP-51-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SJ9: 5-(benzylcarbamoyl)-1-[(4-chloro-3-fluorophenyl)methyl]-1H-indole-2-carboxylic acid(Non-covalent)

SJ9.1: 20 residues within 4Å: Chain A: I.76, F.77, G.79, C.80, Q.81, R.83, S.84, Y.122, L.125, L.128, V.134, L.135, I.136, M.143, F.158, M.159, K.162, H.244, L.264, Y.268 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.77, A:F.77, A:Q.81, A:R.83, A:V.134, A:I.136, A:F.158, A:L.264 Hydrogen bonds: A:S.84, A:S.84, A:Y.122 Salt bridges: A:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, L. et al., Identification of VSP-51-2 as the Novel and Safe PPAR gamma Modulator: Structure-Based Design, Biological Validation and Crystal Analysis. To Be Published

Release Date

2023-07-05

Peptides

Peroxisome proliferator-activated receptor gamma: A
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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