SMTL ID : 3h0a.1

Crystal Structure of Peroxisome Proliferator-Activated Receptor Gamma (PPARg) and Retinoic Acid Receptor Alpha (RXRa) in Complex with 9-cis Retinoic Acid, Co-activator Peptide, and a Partial Agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-2-mer

Ligands

1 x 9RA: 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)ethenyl]benzoic acid(Non-covalent)

9RA.1: 17 residues within 4Å: Chain A: I.41, A.44, A.45, Q.48, W.78, L.82, F.86, R.89, L.99, A.100, V.115, I.118, F.119, C.205, H.208, L.209, F.212 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.41, A:A.45, A:W.78, A:L.82, A:L.82, A:F.86, A:F.86, A:L.99, A:V.115, A:I.118, A:F.119, A:H.208, A:L.209, A:F.212 Hydrogen bonds: A:A.100 Salt bridges: A:R.89

1 x D30: [(4-{[2-(pent-2-yn-1-yloxy)-4-{[4-(trifluoromethyl)phenoxy]methyl}phenyl]sulfanyl}-5,6,7,8-tetrahydronaphthalen-1-yl)oxy]acetic acid(Non-covalent)

D30.2: 20 residues within 4Å: Chain B: L.50, E.54, I.57, R.75, I.76, F.77, G.79, C.80, R.83, S.84, I.121, L.125, L.128, V.134, L.135, I.136, S.137, E.138, L.148, M.159 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.50, B:I.57, B:I.76, B:R.83, B:I.121, B:L.125, B:L.128, B:L.148 Hydrogen bonds: B:R.83, B:E.138, B:G.139 Salt bridges: B:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Connors, R.V. et al., Identification of a PPARdelta agonist with partial agonistic activity on PPARgamma. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-06-09

Peptides

Retinoic acid receptor RXR-alpha: A
Peroxisome proliferator-activated receptor gamma: B
Nuclear receptor coactivator 1, Co-activator Peptide: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
E

Retinoic acid receptor RXR-alpha

Peroxisome proliferator-activated receptor gamma

Nuclear receptor coactivator 1, Co-activator Peptide

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