SMTL ID : 2q26.4 (3 other biounits)

FHV virus like particle

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-oligomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain B: D.221, G.273 Chain D: D.161 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Metal complexes: D:D.161, B:D.221, B:G.273 CA.4: 4 residues within 4Å: Chain D: D.221, G.273 Chain F: T.157, D.161 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain D Metal complexes: F:D.161, D:D.221, D:G.273 CA.6: 4 residues within 4Å: Chain B: D.161 Chain F: D.221, G.273, Q.274 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain F Metal complexes: B:D.161, B:D.161, F:G.273 CA.7: 6 residues within 4Å: Chain B: D.249, E.251 Chain D: D.249, E.251 Chain F: D.249, E.251 5 PLIP interactions: 1 interactions with chain D, 2 interactions with chain F, 2 interactions with chain B Metal complexes: D:D.249, F:D.249, F:E.251, B:D.249, B:D.249

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain B: G.258, Q.260, T.261, P.264, A.265 Chain F: Q.201, F.202, P.203 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain F Hydrogen bonds: B:Q.260, B:T.261, B:A.265, F:Q.201, F:Q.201, F:S.211 SO4.3: 3 residues within 4Å: Chain B: R.87 Chain D: R.87 Chain F: R.87 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 interactions with chain B Salt bridges: F:R.87, D:R.87, B:R.87 SO4.5: 6 residues within 4Å: Chain B: Q.201, P.203 Chain D: G.258, Q.260, T.261, A.265 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:G.258, D:Q.260, D:T.261, D:A.265, B:Q.201 SO4.8: 7 residues within 4Å: Chain D: Q.201, F.202, P.203 Chain F: G.258, Q.260, T.261, A.265 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain D Hydrogen bonds: F:G.258, F:Q.260, F:T.261, F:A.265, D:Q.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, J.E. et al., Structure Definition in the Auto Catalytic Mutation of Icosahedral Virus. To be Published

Release Date

2008-07-15

Peptides

Coat protein beta: BDF
Coat protein gamma: CEG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

D
C

F
E

C
B

E
D

G
F

Coat protein beta

Coat protein gamma

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