- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- hetero-15-15-mer
- Ligands
- 20 x CA: CALCIUM ION(Non-covalent)
- 15 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.4: 11 residues within 4Å:- Chain A: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain E: Q.201, F.202, P.203
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:Q.260, A:T.261, A:A.265, A:E.283, E:Q.201
- Salt bridges: A:E.283
EPE.7: 11 residues within 4Å:- Chain A: Q.201, F.202, P.203
- Chain C: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:Q.260, C:T.261, C:A.265, A:Q.201
- Salt bridges: C:E.283
EPE.8: 11 residues within 4Å:- Chain C: Q.201, F.202, P.203
- Chain E: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
8 PLIP interactions:7 interactions with chain E, 1 interactions with chain C- Hydrogen bonds: E:Q.260, E:T.261, E:A.265, E:E.283, C:Q.201
- Water bridges: E:S.156, E:S.156
- Salt bridges: E:E.283
EPE.12: 11 residues within 4Å:- Chain H: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain L: Q.201, F.202, P.203
6 PLIP interactions:5 interactions with chain H, 1 interactions with chain L- Hydrogen bonds: H:Q.260, H:T.261, H:A.265, H:E.283, L:Q.201
- Salt bridges: H:E.283
EPE.15: 11 residues within 4Å:- Chain H: Q.201, F.202, P.203
- Chain J: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
5 PLIP interactions:4 interactions with chain J, 1 interactions with chain H- Hydrogen bonds: J:Q.260, J:T.261, J:A.265, H:Q.201
- Salt bridges: J:E.283
EPE.16: 11 residues within 4Å:- Chain J: Q.201, F.202, P.203
- Chain L: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
8 PLIP interactions:7 interactions with chain L, 1 interactions with chain J- Hydrogen bonds: L:Q.260, L:T.261, L:A.265, L:E.283, J:Q.201
- Water bridges: L:S.156, L:S.156
- Salt bridges: L:E.283
EPE.20: 11 residues within 4Å:- Chain O: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain S: Q.201, F.202, P.203
6 PLIP interactions:5 interactions with chain O, 1 interactions with chain S- Hydrogen bonds: O:Q.260, O:T.261, O:A.265, O:E.283, S:Q.201
- Salt bridges: O:E.283
EPE.23: 11 residues within 4Å:- Chain O: Q.201, F.202, P.203
- Chain Q: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
5 PLIP interactions:4 interactions with chain Q, 1 interactions with chain O- Hydrogen bonds: Q:Q.260, Q:T.261, Q:A.265, O:Q.201
- Salt bridges: Q:E.283
EPE.24: 11 residues within 4Å:- Chain Q: Q.201, F.202, P.203
- Chain S: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
8 PLIP interactions:7 interactions with chain S, 1 interactions with chain Q- Hydrogen bonds: S:Q.260, S:T.261, S:A.265, S:E.283, Q:Q.201
- Water bridges: S:S.156, S:S.156
- Salt bridges: S:E.283
EPE.28: 11 residues within 4Å:- Chain V: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain Z: Q.201, F.202, P.203
6 PLIP interactions:5 interactions with chain V, 1 interactions with chain Z- Hydrogen bonds: V:Q.260, V:T.261, V:A.265, V:E.283, Z:Q.201
- Salt bridges: V:E.283
EPE.31: 11 residues within 4Å:- Chain V: Q.201, F.202, P.203
- Chain X: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
5 PLIP interactions:4 interactions with chain X, 1 interactions with chain V- Hydrogen bonds: X:Q.260, X:T.261, X:A.265, V:Q.201
- Salt bridges: X:E.283
EPE.32: 11 residues within 4Å:- Chain X: Q.201, F.202, P.203
- Chain Z: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
8 PLIP interactions:1 interactions with chain X, 7 interactions with chain Z- Hydrogen bonds: X:Q.201, Z:Q.260, Z:T.261, Z:A.265, Z:E.283
- Water bridges: Z:S.156, Z:S.156
- Salt bridges: Z:E.283
EPE.36: 11 residues within 4Å:- Chain 2: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain 6: Q.201, F.202, P.203
6 PLIP interactions:5 interactions with chain 2, 1 interactions with chain 6- Hydrogen bonds: 2:Q.260, 2:T.261, 2:A.265, 2:E.283, 6:Q.201
- Salt bridges: 2:E.283
EPE.39: 11 residues within 4Å:- Chain 2: Q.201, F.202, P.203
- Chain 4: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
5 PLIP interactions:4 interactions with chain 4, 1 interactions with chain 2- Hydrogen bonds: 4:Q.260, 4:T.261, 4:A.265, 2:Q.201
- Salt bridges: 4:E.283
EPE.40: 11 residues within 4Å:- Chain 4: Q.201, F.202, P.203
- Chain 6: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
8 PLIP interactions:7 interactions with chain 6, 1 interactions with chain 4- Hydrogen bonds: 6:Q.260, 6:T.261, 6:A.265, 6:E.283, 4:Q.201
- Water bridges: 6:S.156, 6:S.156
- Salt bridges: 6:E.283
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 2 residues within 4Å:- Chain C: S.102
- Chain L: R.300
Ligand excluded by PLIPCL.14: 2 residues within 4Å:- Chain J: S.102
- Chain S: R.300
Ligand excluded by PLIPCL.22: 2 residues within 4Å:- Chain Q: S.102
- Chain Z: R.300
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain 6: R.300
- Chain X: S.102
Ligand excluded by PLIPCL.38: 2 residues within 4Å:- Chain 4: S.102
- Chain E: R.300
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Speir, J.A. et al., Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides. to be published (2012)
- Release Date
- 2012-08-01
- Peptides
- Capsid protein beta: ACEHJLOQSVXZ246
Capsid protein Gamma: BDFIKMPRTWY0357 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CH
AJ
BL
CO
AQ
BS
CV
AX
BZ
C2
A4
B6
CB
DD
EF
FI
DK
EM
FP
DR
ET
FW
DY
E0
F3
D5
E7
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- hetero-15-15-mer
- Ligands
- 20 x CA: CALCIUM ION(Non-covalent)
- 15 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Speir, J.A. et al., Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides. to be published (2012)
- Release Date
- 2012-08-01
- Peptides
- Capsid protein beta: ACEHJLOQSVXZ246
Capsid protein Gamma: BDFIKMPRTWY0357 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CH
AJ
BL
CO
AQ
BS
CV
AX
BZ
C2
A4
B6
CB
DD
EF
FI
DK
EM
FP
DR
ET
FW
DY
E0
F3
D5
E7
F