SMTL ID : 2z2q.1 (3 other biounits)

Crystal structure of Flock House Virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-oligomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain B: D.220, G.272 Chain D: T.156, D.160 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: B:D.220, B:G.272, D:D.160, H2O.106 CA.2: 6 residues within 4Å: Chain B: D.248, E.250 Chain D: D.248, E.250 Chain F: D.248, E.250 No protein-ligand interaction detected (PLIP) CA.5: 4 residues within 4Å: Chain D: D.220, G.272 Chain F: T.156, D.160 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: D:D.220, D:G.272, F:D.160, H2O.74 CA.7: 4 residues within 4Å: Chain B: T.156, D.160 Chain F: D.220, G.272 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: F:D.220, F:G.272, B:D.160, H2O.172

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 9 residues within 4Å: Chain B: G.257, Q.259, T.260, P.263, A.264 Chain F: Q.200, F.201, P.202, S.210 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain B Hydrogen bonds: F:Q.200, F:Q.200, F:S.210, B:Q.259, B:T.260, B:A.264 SO4.4: 3 residues within 4Å: Chain B: R.86 Chain D: R.86 Chain F: R.86 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 1 interactions with chain F Salt bridges: D:R.86, B:R.86 Hydrogen bonds: F:R.86 SO4.6: 8 residues within 4Å: Chain B: Q.200, F.201, P.202 Chain D: G.257, Q.259, T.260, P.263, A.264 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain D Hydrogen bonds: B:Q.200, D:G.257, D:Q.259, D:T.260, D:A.264, D:A.264 SO4.8: 9 residues within 4Å: Chain D: Q.200, F.201, P.202, S.210 Chain F: G.257, Q.259, T.260, P.263, A.264 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain F Hydrogen bonds: D:Q.200, D:S.210, F:G.257, F:Q.259, F:T.260, F:A.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, J.E. et al., Structural Definition in the Auto Catalytic Maturation of Icosahedral Virus. To be Published

Release Date

2008-07-15

Peptides

Coat protein beta: BDF
Coat protein gamma: CEG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

D
C

F
E

C
B

E
D

G
F

Coat protein beta

Coat protein gamma

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