SMTL ID : 3lob.1 (3 other biounits)

Crystal Structure of Flock House Virus calcium mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-3-3-mer

Ligands

1 x U- U- U- A- U- C- U: RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3')(Non-covalent)

U-U-U-A-U-C-U.1: 8 residues within 4Å: Chain C: L.56, T.57, Q.61, L.64, K.68, F.76 Chain F: K.8, K.12 Protein-ligand interaction information (PLIP) not available

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: G.258, Q.260, T.261, P.264, A.265 Chain C: Q.201, P.203 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Q.260, A:A.265, C:Q.201 SO4.3: 8 residues within 4Å: Chain A: Q.201, P.203, S.211 Chain B: G.258, Q.260, T.261, P.264, A.265 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.258, B:Q.260, B:T.261, B:A.265, A:Q.201, A:S.211 SO4.4: 1 residues within 4Å: Chain B: H.215 No protein-ligand interaction detected (PLIP) SO4.5: 3 residues within 4Å: Chain B: R.87 Chain C: R.87, N.249 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:N.249 Salt bridges: C:R.87, B:R.87 SO4.6: 8 residues within 4Å: Chain B: Q.201, F.202, P.203 Chain C: G.258, Q.260, T.261, P.264, A.265 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.260, C:T.261, C:A.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banerjee, M. et al., Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate. J.Virol. (2010)

Release Date

2010-04-21

Peptides

Coat protein beta: ABC
Coat protein gamma: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Coat protein beta

Coat protein gamma

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