- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-18-18-mer
- Ligands
- 24 x CA: CALCIUM ION(Non-covalent)
- 18 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.4: 12 residues within 4Å:- Chain A: S.156, G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain E: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.7: 11 residues within 4Å:- Chain A: Q.201, F.202, P.203
- Chain C: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.8: 11 residues within 4Å:- Chain C: Q.201, F.202, P.203
- Chain E: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.12: 12 residues within 4Å:- Chain H: S.156, G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain L: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.15: 11 residues within 4Å:- Chain H: Q.201, F.202, P.203
- Chain J: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.16: 11 residues within 4Å:- Chain J: Q.201, F.202, P.203
- Chain L: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.20: 12 residues within 4Å:- Chain O: S.156, G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain S: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.23: 11 residues within 4Å:- Chain O: Q.201, F.202, P.203
- Chain Q: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.24: 11 residues within 4Å:- Chain Q: Q.201, F.202, P.203
- Chain S: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.28: 12 residues within 4Å:- Chain V: S.156, G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain Z: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.31: 11 residues within 4Å:- Chain V: Q.201, F.202, P.203
- Chain X: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.32: 11 residues within 4Å:- Chain X: Q.201, F.202, P.203
- Chain Z: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.36: 12 residues within 4Å:- Chain 2: S.156, G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain 6: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.39: 11 residues within 4Å:- Chain 2: Q.201, F.202, P.203
- Chain 4: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.40: 11 residues within 4Å:- Chain 4: Q.201, F.202, P.203
- Chain 6: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.44: 12 residues within 4Å:- Chain 9: S.156, G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain d: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.47: 11 residues within 4Å:- Chain 9: Q.201, F.202, P.203
- Chain b: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.48: 11 residues within 4Å:- Chain b: Q.201, F.202, P.203
- Chain d: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIP- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 2 residues within 4Å:- Chain C: S.102
- Chain L: R.300
Ligand excluded by PLIPCL.14: 1 residues within 4Å:- Chain J: S.102
Ligand excluded by PLIPCL.22: 1 residues within 4Å:- Chain Q: S.102
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain S: R.300
- Chain X: S.102
Ligand excluded by PLIPCL.38: 2 residues within 4Å:- Chain 4: S.102
- Chain d: R.300
Ligand excluded by PLIPCL.46: 1 residues within 4Å:- Chain b: S.102
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Speir, J.A. et al., Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides. to be published (2012)
- Release Date
- 2012-08-01
- Peptides
- Capsid protein beta: ACEHJLOQSVXZ2469bd
Capsid protein gamma: BDFIKMPRTWY0357ace - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CH
AJ
BL
CO
AQ
BS
CV
AX
BZ
C2
A4
B6
C9
Ab
Bd
CB
DD
EF
FI
DK
EM
FP
DR
ET
FW
DY
E0
F3
D5
E7
Fa
Dc
Ee
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-18-18-mer
- Ligands
- 24 x CA: CALCIUM ION(Non-covalent)
- 18 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Speir, J.A. et al., Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides. to be published (2012)
- Release Date
- 2012-08-01
- Peptides
- Capsid protein beta: ACEHJLOQSVXZ2469bd
Capsid protein gamma: BDFIKMPRTWY0357ace - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CH
AJ
BL
CO
AQ
BS
CV
AX
BZ
C2
A4
B6
C9
Ab
Bd
CB
DD
EF
FI
DK
EM
FP
DR
ET
FW
DY
E0
F3
D5
E7
Fa
Dc
Ee
F