SMTL ID : 3lob.3 (3 other biounits)

Crystal Structure of Flock House Virus calcium mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-18-18-mer

Ligands

6 x U- U- U- A- U- C- U: RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3')(Non-covalent)

U-U-U-A-U-C-U.1: 14 residues within 4Å: Chain C: L.56, T.57, Q.61, L.64, K.68, F.76 Chain F: K.8, K.12 Ligands: U-U-U-A-U-C-U.13, U-U-U-A-U-C-U.13, U-U-U-A-U-C-U.13, U-U-U-A-U-C-U.13, U-U-U-A-U-C-U.13, U-U-U-A-U-C-U.13 Protein-ligand interaction information (PLIP) not available U-U-U-A-U-C-U.7: 14 residues within 4Å: Chain I: L.56, T.57, Q.61, L.64, K.68, F.76 Chain L: K.8, K.12 Ligands: U-U-U-A-U-C-U.25, U-U-U-A-U-C-U.25, U-U-U-A-U-C-U.25, U-U-U-A-U-C-U.25, U-U-U-A-U-C-U.25, U-U-U-A-U-C-U.25 Protein-ligand interaction information (PLIP) not available U-U-U-A-U-C-U.13: 14 residues within 4Å: Chain O: L.56, T.57, Q.61, L.64, K.68, F.76 Chain R: K.8, K.12 Ligands: U-U-U-A-U-C-U.1, U-U-U-A-U-C-U.1, U-U-U-A-U-C-U.1, U-U-U-A-U-C-U.1, U-U-U-A-U-C-U.1, U-U-U-A-U-C-U.1 Protein-ligand interaction information (PLIP) not available U-U-U-A-U-C-U.19: 14 residues within 4Å: Chain U: L.56, T.57, Q.61, L.64, K.68, F.76 Chain X: K.8, K.12 Ligands: U-U-U-A-U-C-U.31, U-U-U-A-U-C-U.31, U-U-U-A-U-C-U.31, U-U-U-A-U-C-U.31, U-U-U-A-U-C-U.31, U-U-U-A-U-C-U.31 Protein-ligand interaction information (PLIP) not available U-U-U-A-U-C-U.25: 14 residues within 4Å: Chain 0: L.56, T.57, Q.61, L.64, K.68, F.76 Chain 3: K.8, K.12 Ligands: U-U-U-A-U-C-U.7, U-U-U-A-U-C-U.7, U-U-U-A-U-C-U.7, U-U-U-A-U-C-U.7, U-U-U-A-U-C-U.7, U-U-U-A-U-C-U.7 Protein-ligand interaction information (PLIP) not available U-U-U-A-U-C-U.31: 14 residues within 4Å: Chain 6: L.56, T.57, Q.61, L.64, K.68, F.76 Chain 9: K.8, K.12 Ligands: U-U-U-A-U-C-U.19, U-U-U-A-U-C-U.19, U-U-U-A-U-C-U.19, U-U-U-A-U-C-U.19, U-U-U-A-U-C-U.19, U-U-U-A-U-C-U.19 Protein-ligand interaction information (PLIP) not available

30 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: G.258, Q.260, T.261, P.264, A.265 Chain C: Q.201, P.203 Ligand excluded by PLIP SO4.3: 8 residues within 4Å: Chain A: Q.201, P.203, S.211 Chain B: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.4: 1 residues within 4Å: Chain B: H.215 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain B: R.87 Chain C: R.87, N.249 Ligand excluded by PLIP SO4.6: 8 residues within 4Å: Chain B: Q.201, F.202, P.203 Chain C: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.8: 7 residues within 4Å: Chain G: G.258, Q.260, T.261, P.264, A.265 Chain I: Q.201, P.203 Ligand excluded by PLIP SO4.9: 8 residues within 4Å: Chain G: Q.201, P.203, S.211 Chain H: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.10: 1 residues within 4Å: Chain H: H.215 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain H: R.87 Chain I: R.87, N.249 Ligand excluded by PLIP SO4.12: 8 residues within 4Å: Chain H: Q.201, F.202, P.203 Chain I: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain M: G.258, Q.260, T.261, P.264, A.265 Chain O: Q.201, P.203 Ligand excluded by PLIP SO4.15: 8 residues within 4Å: Chain M: Q.201, P.203, S.211 Chain N: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.16: 1 residues within 4Å: Chain N: H.215 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain N: R.87 Chain O: R.87, N.249 Ligand excluded by PLIP SO4.18: 8 residues within 4Å: Chain N: Q.201, F.202, P.203 Chain O: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.20: 7 residues within 4Å: Chain S: G.258, Q.260, T.261, P.264, A.265 Chain U: Q.201, P.203 Ligand excluded by PLIP SO4.21: 8 residues within 4Å: Chain S: Q.201, P.203, S.211 Chain T: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.22: 1 residues within 4Å: Chain T: H.215 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain T: R.87 Chain U: R.87, N.249 Ligand excluded by PLIP SO4.24: 8 residues within 4Å: Chain T: Q.201, F.202, P.203 Chain U: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.26: 7 residues within 4Å: Chain 0: Q.201, P.203 Chain Y: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.27: 8 residues within 4Å: Chain Y: Q.201, P.203, S.211 Chain Z: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.28: 1 residues within 4Å: Chain Z: H.215 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain 0: R.87, N.249 Chain Z: R.87 Ligand excluded by PLIP SO4.30: 8 residues within 4Å: Chain 0: G.258, Q.260, T.261, P.264, A.265 Chain Z: Q.201, F.202, P.203 Ligand excluded by PLIP SO4.32: 7 residues within 4Å: Chain 4: G.258, Q.260, T.261, P.264, A.265 Chain 6: Q.201, P.203 Ligand excluded by PLIP SO4.33: 8 residues within 4Å: Chain 4: Q.201, P.203, S.211 Chain 5: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.34: 1 residues within 4Å: Chain 5: H.215 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain 5: R.87 Chain 6: R.87, N.249 Ligand excluded by PLIP SO4.36: 8 residues within 4Å: Chain 5: Q.201, F.202, P.203 Chain 6: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banerjee, M. et al., Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate. J.Virol. (2010)

Release Date

2010-04-21

Peptides

Coat protein beta: ABCGHIMNOSTUYZ0456
Coat protein gamma: DEFJKLPQRVWX123789

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

G
A

H
B

I
C

M
A

N
B

O
C

S
A

T
B

U
C

Y
A

Z
B

0
C

4
A

5
B

6
C

D
D

E
E

F
F

J
D

K
E

L
F

P
D

Q
E

R
F

V
D

W
E

X
F

1
D

2
E

3
F

7
D

8
E

9
F

Coat protein beta

Coat protein gamma

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