SMTL ID : 2uyi.2 (1 other biounit)

CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH ADP AND THIOPHENE CONTAINING INHIBITOR 33

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.24, R.26, P.27, Q.106, T.107, G.108, T.109, G.110, K.111, T.112, F.113, E.118 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.24, A:G.108, A:T.109, A:G.110, A:K.111, A:T.112, A:F.113, A:E.118 Water bridges: A:R.24, A:T.107, A:K.111, A:T.112 Salt bridges: A:K.111 pi-Stacking: A:F.113, A:F.113

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.112 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.112, H2O.84, H2O.96, H2O.134, H2O.136

1 x K02: (5R)-N,N-DIETHYL-5-METHYL-2-[(THIOPHEN-2-YLCARBONYL)AMINO]-4,5,6,7-TETRAHYDRO-1-BENZOTHIOPHENE-3-CARBOXAMIDE(Non-covalent)

K02.3: 17 residues within 4Å: Chain A: E.116, G.117, E.118, R.119, W.127, D.130, A.133, I.136, P.137, L.160, Y.211, L.214, E.215, G.217, A.218, R.221, F.239 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.116, A:R.119, A:A.133, A:I.136, A:L.160, A:L.214, A:L.214, A:E.215, A:R.221, A:F.239 Hydrogen bonds: A:G.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkerton, A.B. et al., Synthesis and Sar of Thiophene Containing Kinesin Spindle Protein (Ksp) Inhibitors. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-05-22

Peptides

KINESIN-LIKE PROTEIN KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

KINESIN-LIKE PROTEIN KIF11

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