SMTL ID : 4bxn.2 (1 other biounit)

Eg5(WT) complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.1: 15 residues within 4Å: Chain A: R.24, R.26, P.27, Q.78, G.105, Q.106, T.107, G.108, T.109, G.110, K.111, T.112, F.113, T.114 Ligands: CD.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.24, A:Q.78, A:G.108, A:T.109, A:G.110, A:G.110, A:K.111, A:T.112, A:F.113, A:T.114, A:T.335 Salt bridges: A:K.111

13 x CD: CADMIUM ION(Non-covalent)

CD.2: 5 residues within 4Å: Chain A: C.25, C.43, G.73, A.74 Ligands: CD.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.25, A:C.25, H2O.1 CD.3: 3 residues within 4Å: Chain A: K.111, T.112 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.112 CD.4: 3 residues within 4Å: Chain A: C.25, C.43 Ligands: CD.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.25, A:C.43 CD.5: 2 residues within 4Å: Chain A: R.297, E.313 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.313 CD.6: 2 residues within 4Å: Chain A: H.205, E.209 No protein-ligand interaction detected (PLIP) CD.7: 2 residues within 4Å: Chain A: C.87, D.91 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.91, H2O.1 CD.8: 2 residues within 4Å: Chain A: V.46, K.362 No protein-ligand interaction detected (PLIP) CD.9: 4 residues within 4Å: Chain A: N.190, K.260, D.322 Ligands: CL.18 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.322 CD.10: 3 residues within 4Å: Chain A: E.201, T.242, K.260 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.242, H2O.1 CD.11: 1 residues within 4Å: Chain A: D.149 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.149 CD.13: 1 residues within 4Å: Chain A: H.244 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.244, A:H.244 CD.15: 4 residues within 4Å: Chain A: F.72, G.73, A.74, S.75 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.73 CD.16: 1 residues within 4Å: Chain A: N.165 No protein-ligand interaction detected (PLIP)

1 x 6LX: N-(3-aminopropyl)-N-[(1R)-1-(3-benzyl-7-chloro-4-oxo-4H-chromen-2-yl)-2-methylpropyl]-4-methylbenzamide(Covalent)

6LX.12: 12 residues within 4Å: Chain A: E.116, G.117, E.118, W.127, I.136, P.137, L.160, Y.211, L.214, E.215, G.217, A.218 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.116, A:P.137, A:L.160, A:Y.211, A:L.214, A:L.214 Hydrogen bonds: A:G.117

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 4 residues within 4Å: Chain A: S.233, R.234, A.267, G.268 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain A: N.190, K.260, D.322 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain A: K.260 Ligands: CD.9 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talapatra, S.K. et al., The Mitotic Kinesin Eg5 Overcomes Inhibition to the Phase I/II Clinical Candidate Sb743921 by an Allosteric Resistance Mechanism. J.Med.Chem. (2013)

Release Date

2013-07-31

Peptides

KINESIN-LIKE PROTEIN KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

KINESIN-LIKE PROTEIN KIF11

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