SMTL ID : 4a50.1

Crystal structure of human kinesin Eg5 in complex with 2-Amino-5-(3-methylphenyl)-5,5-diphenylpentanoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.24, R.26, P.27, Q.106, T.107, G.108, T.109, G.110, K.111, T.112, F.113, E.118 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.24, A:G.108, A:T.109, A:G.110, A:K.111, A:T.112, A:F.113, A:E.118 Water bridges: A:K.111, A:T.112, A:T.112, A:T.112, A:S.232, A:S.232 Salt bridges: A:K.111 pi-Stacking: A:F.113, A:F.113

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.112, S.232 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.112, H2O.1, H2O.1, H2O.1, H2O.1

1 x DQ6: (2S)-2-AMINO-5-(3-METHYLPHENYL)-5,5-DIPHENYLPROPANOIC ACID(Non-covalent)

DQ6.3: 14 residues within 4Å: Chain A: T.112, E.116, G.117, E.118, R.119, A.133, I.136, P.137, L.160, Y.211, L.214, E.215, R.221 Ligands: DQ7.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.116, A:E.116, A:R.119, A:R.119, A:A.133, A:I.136, A:P.137, A:L.160, A:L.214, A:L.214 Hydrogen bonds: A:E.116 Salt bridges: A:R.221

1 x DQ7: (2R)-2-AMINO-5-(3-METHYLPHENYL)-5,5-DIPHENYLPROPANOIC ACID(Non-covalent)

DQ7.4: 12 residues within 4Å: Chain A: T.112, E.116, G.117, E.118, R.119, A.133, I.136, P.137, Y.211, L.214, E.215 Ligands: DQ6.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.116, A:E.116, A:R.119, A:A.133, A:I.136, A:P.137, A:L.214, A:L.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Triphenylbutanamines: Kinesin Spindle Protein Inhibitors with in Vivo Antitumor Activity. J.Med.Chem. (2012)

Release Date

2012-10-31

Peptides

KINESIN-LIKE PROTEIN KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KINESIN-LIKE PROTEIN KIF11

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