SMTL ID : 2wf5.1

Structure of Beta-Phosphoglucomutase inhibited with Glucose-6-phosphate and trifluoromagnesate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)

BG6.1: 17 residues within 4Å: Chain A: D.10, H.20, L.44, K.45, G.46, V.47, S.48, R.49, S.52, K.76, S.114, A.115, S.116, K.117, N.118 Ligands: MGF.3, MG.4 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:D.10, A:D.10, A:L.44, A:G.46, A:S.52, A:S.52, A:A.115, A:S.116, A:S.116, A:S.116, A:K.117, A:N.118, A:N.118 Water bridges: A:H.20, A:H.20, A:R.49, A:R.49, A:K.76, A:K.76, A:S.171 Salt bridges: A:H.20, A:H.20, A:R.49, A:K.76

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 5 residues within 4Å: Chain A: D.8, D.10, D.170 Ligands: BG6.1, MGF.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:D.10, A:D.170, H2O.7, H2O.7

1 x MGF: TRIFLUOROMAGNESATE(Non-covalent)

MGF.3: 8 residues within 4Å: Chain A: D.8, L.9, D.10, S.114, A.115, K.145 Ligands: BG6.1, MG.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baxter, N.J. et al., Atomic details of near-transition state conformers for enzyme phosphoryl transfer revealed by MgF-3 rather than by phosphoranes. Proc. Natl. Acad. Sci. U.S.A. (2010)

Release Date

2009-09-15

Peptides

BETA-PHOSPHOGLUCOMUTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-PHOSPHOGLUCOMUTASE

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