SMTL ID : 6qzg.1

Beta-glucose 1,6-bisphosphonate bound to wild type beta-phosphoglucomutse in an open conformation.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.8, D.10, E.169, D.170 Ligands: JLT.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:D.10, A:D.170, H2O.1, H2O.2 MG.3: 5 residues within 4Å: Chain B: D.8, D.10, E.169, D.170 Ligands: JLT.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.8, B:D.10, B:D.170, H2O.3, H2O.4

2 x JLT: 3,7-anhydro-1,2,8-trideoxy-1,8-diphosphono-D-glycero-D-gulo-octitol(Non-covalent)

JLT.2: 12 residues within 4Å: Chain A: D.8, L.9, D.10, H.20, K.45, G.46, S.114, A.115, S.116, K.117, K.145 Ligands: MG.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:L.9, A:D.10, A:D.10, A:G.46, A:A.115, A:A.115, A:S.116, A:K.117, A:K.145 Water bridges: A:D.8, A:R.49, A:K.76, A:E.169 JLT.4: 16 residues within 4Å: Chain B: D.8, L.9, D.10, H.20, L.44, K.45, G.46, V.47, R.49, S.114, A.115, S.116, K.117, N.118, K.145 Ligands: MG.3 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:L.9, B:D.10, B:D.10, B:D.10, B:H.20, B:H.20, B:G.46, B:R.49, B:A.115, B:K.117, B:N.118 Water bridges: B:S.52, B:S.52, B:S.171, B:S.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robertson, A.J. et al., Beta-glucose 1,6-bisphosphonate bound to wild type beta-phosphoglucomutse in an open conformation. To Be Published

Release Date

2020-04-01

Peptides

Beta-phosphoglucomutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-phosphoglucomutase

Related Entries With Identical Sequence