SMTL ID : 5oly.1

5-fluorotryptophan labeled beta-phosphoglucomutase in a closed conformation, monoclinic crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MGF: TRIFLUOROMAGNESATE(Non-covalent)

MGF.1: 9 residues within 4Å: Chain A: D.8, L.9, D.10, S.114, A.115, K.145, D.170 Ligands: MG.2, G6P.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.8 MGF.8: 9 residues within 4Å: Chain B: D.8, L.9, D.10, S.114, A.115, K.145, D.170 Ligands: MG.5, G6P.7 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.8

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 5 residues within 4Å: Chain A: D.8, D.10, D.170 Ligands: MGF.1, G6P.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.8, A:D.10, A:D.170 MG.4: 2 residues within 4Å: Chain A: G.130, F.132 No protein-ligand interaction detected (PLIP) MG.5: 6 residues within 4Å: Chain B: D.8, D.10, E.169, D.170 Ligands: G6P.7, MGF.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.8, B:D.10, B:D.170 MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x G6P: 6-O-phosphono-alpha-D-glucopyranose(Non-covalent)

G6P.3: 17 residues within 4Å: Chain A: D.8, D.10, H.20, L.44, K.45, G.46, V.47, S.48, R.49, S.52, K.76, A.115, S.116, K.117, N.118 Ligands: MGF.1, MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.8, A:L.44, A:G.46, A:S.52, A:A.115, A:S.116, A:K.117, A:N.118, A:N.118 Water bridges: A:N.41, A:V.47, A:R.49, A:R.49, A:S.52, A:K.76, A:K.76, A:K.76 Salt bridges: A:H.20, A:H.20, A:R.49, A:K.76 G6P.7: 17 residues within 4Å: Chain B: D.10, H.20, W.24, L.44, K.45, G.46, V.47, R.49, S.52, K.76, S.114, A.115, S.116, K.117, N.118 Ligands: MG.5, MGF.8 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:D.10, B:D.10, B:L.44, B:G.46, B:S.52, B:A.115, B:A.115, B:S.116, B:S.116, B:K.117, B:N.118, B:N.118 Water bridges: B:V.47, B:R.49, B:R.49, B:S.52, B:K.76, B:K.76 Salt bridges: B:H.20, B:H.20, B:R.49, B:K.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ampaw, A. et al., Observing enzyme ternary transition state analogue complexes by19F NMR spectroscopy. Chem Sci (2017)

Release Date

2017-11-01

Peptides

Beta-phosphoglucomutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

Beta-phosphoglucomutase

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