SMTL ID : 5olx.1

5-fluorotryptophan labeled beta-phosphoglucomutase in a closed conformation, orthorhomic crystal form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 6 residues within 4Å: Chain A: D.8, D.10, D.170 Ligands: BG6.2, MGF.4, MGF.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:D.10, A:D.170, H2O.2, H2O.4 MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)

BG6.2: 20 residues within 4Å: Chain A: D.10, H.20, W.24, L.44, K.45, G.46, V.47, R.49, S.52, K.76, S.114, A.115, S.116, K.117, N.118 Ligands: MG.1, MGF.4, MGF.5, MGF.6, MGF.7 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:L.44, A:G.46, A:S.52, A:A.115, A:A.115, A:S.116, A:K.117, A:N.118, A:N.118 Water bridges: A:D.8, A:D.10, A:H.20, A:V.47, A:R.49, A:R.49, A:S.52, A:K.76, A:K.76, A:K.76, A:S.171 Salt bridges: A:H.20, A:H.20, A:R.49, A:K.76

4 x MGF: TRIFLUOROMAGNESATE(Non-covalent)

MGF.4: 11 residues within 4Å: Chain A: D.8, L.9, D.10, S.114, A.115, K.145 Ligands: MG.1, BG6.2, MGF.5, MGF.6, MGF.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.8 MGF.5: 7 residues within 4Å: Chain A: D.8, D.10 Ligands: MG.1, BG6.2, MGF.4, MGF.6, MGF.7 No protein-ligand interaction detected (PLIP) MGF.6: 8 residues within 4Å: Chain A: D.8, L.9, D.10, S.114 Ligands: BG6.2, MGF.4, MGF.5, MGF.7 No protein-ligand interaction detected (PLIP) MGF.7: 8 residues within 4Å: Chain A: D.8, S.114, A.115, K.145 Ligands: BG6.2, MGF.4, MGF.5, MGF.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ampaw, A. et al., Observing enzyme ternary transition state analogue complexes by19F NMR spectroscopy. Chem Sci (2017)

Release Date

2017-11-01

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase

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