SMTL ID : 6h93.1 (1 other biounit)

Beta-phosphoglucomutase from Lactococcus lactis with inorganic phosphate bound in an open conformer to 1.8 A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.8, D.10, E.169, D.170 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.8, A:D.10, A:E.169, A:D.170, H2O.5

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: S.163, G.182, A.183, L.184, W.216, K.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.163, A:K.219 EDO.3: 5 residues within 4Å: Chain A: A.17, E.18, F.21, R.38, N.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.17, A:R.38 Water bridges: A:E.18 EDO.4: 4 residues within 4Å: Chain A: V.201, P.202, H.206, F.211 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.206

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 5 residues within 4Å: Chain A: D.10, T.16, H.20, S.116 Ligands: ACT.6 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.10, A:T.16, A:N.118 Salt bridges: A:H.20 ACT.6: 5 residues within 4Å: Chain A: H.20, L.44, K.45, G.46 Ligands: ACT.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.46 Water bridges: A:D.10, A:H.20

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.7: 4 residues within 4Å: Chain A: H.20, R.49, K.76, K.117 12 PLIP interactions: 12 interactions with chain A Water bridges: A:R.49, A:K.76, A:K.76, A:K.76, A:N.77, A:K.117, A:K.117, A:K.117 Salt bridges: A:H.20, A:R.49, A:K.76, A:K.117

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.8: 5 residues within 4Å: Chain A: N.127, L.128, T.129, G.130, Y.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.127, A:G.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robertson, A.J. et al., Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase. To Be Published

Release Date

2020-08-26

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase

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