SMTL ID : 2xu4.1

CATHEPSIN L WITH A NITRILE INHIBITOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x DJT: (2S,4R)-4-(2-CHLOROPHENYL)SULFONYL-1-[1-(4-FLUOROPHENYL)CYCLOPROPYL]CARBONYL-N-[1-(IMINOMETHYL)CYCLOPROPYL]PYRROLIDINE-2-CARBOXAMIDE(Covalent)

DJT.1: 18 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, E.63, N.66, G.67, G.68, L.69, M.70, A.135, M.161, D.162, H.163, G.164, A.214 Ligands: GOL.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.69, A:A.135, A:A.214 Hydrogen bonds: A:Q.19, A:C.25, A:G.68, A:D.162 Water bridges: A:C.22

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: A.138, G.139, L.144, D.162, H.163, W.189 Ligands: DJT.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.162, A:D.162 GOL.3: 6 residues within 4Å: Chain A: N.18, Q.19, G.20, Q.21, Y.91, A.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hardegger, L.A. et al., Systematic Investigation of Halogen Bonding in Protein-Ligand Interactions. Angew.Chem.Int.Ed.Engl. (2011)

Release Date

2011-01-12

Peptides

CATHEPSIN L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CATHEPSIN L1

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