SMTL ID : 3h89.2 (5 other biounits)

A combined crystallographic and molecular dynamics study of cathepsin-L retro-binding inhibitors(compound 4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NSX: N~2~,N~6~-bis(biphenyl-4-ylacetyl)-L-lysyl-D-arginyl-N-(2-phenylethyl)-L-tyrosinamide(Non-covalent)

NSX.1: 23 residues within 4Å: Chain A: Q.19, G.23, C.25, W.26, G.61, E.63, G.67, G.68, L.69, M.70, Y.72, A.135, A.138, G.139, H.140, E.141, F.145, M.161, D.162, H.163, G.164, W.189, A.214 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:E.63, A:L.69, A:L.69, A:Y.72, A:A.135, A:A.138, A:E.141, A:F.145, A:H.163 Hydrogen bonds: A:G.68, A:G.68, A:A.138, A:M.161, A:M.161, A:D.162, A:D.162 Water bridges: A:Q.19, A:Q.19, A:M.70, A:D.71, A:G.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shenoy, R.T. et al., A combined crystallographic and molecular dynamics study of cathepsin L retrobinding inhibitors. J.Med.Chem. (2009)

Release Date

2009-10-20

Peptides

Cathepsin L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cathepsin L1

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