SMTL ID : 2xu5.1

CATHEPSIN L WITH A NITRILE INHIBITOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x XU5: (2S,4R)-4-(2-CHLOROPHENYL)SULFONYL-N-[1-(IMINOMETHYL)CYCLOPROPYL]-1-[1-(4-METHYLPHENYL)CYCLOPROPYL]CARBONYL-PYRROLIDINE-2-CARBOXAMIDE(Covalent)

XU5.1: 17 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, G.61, E.63, G.67, G.68, L.69, M.70, A.135, M.161, D.162, H.163, G.164, A.214 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.26, A:E.63, A:L.69, A:A.135, A:A.214 Hydrogen bonds: A:Q.19, A:C.25, A:G.68, A:D.162 Water bridges: A:C.22

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: D.84, S.88, Y.89, P.90, K.99, N.101 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.84 Water bridges: A:E.92, A:E.92

1 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 6 residues within 4Å: Chain A: N.18, Q.19, G.20, Q.21, L.144, W.189 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.189 Hydrogen bonds: A:G.20, A:G.20, A:G.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hardegger, L.A. et al., Systematic Investigation of Halogen Bonding in Protein-Ligand Interactions. Angew.Chem.Int.Ed.Engl. (2011)

Release Date

2011-01-12

Peptides

CATHEPSIN L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CATHEPSIN L1

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