SMTL ID : 3h8b.4 (5 other biounits)

A combined crystallographic and molecular dynamics study of cathepsin-L retro-binding inhibitors(compound 9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NSY: N~2~,N~6~-bis(biphenyl-4-ylacetyl)-L-lysyl-D-arginyl-N-(2-phenylethyl)-L-phenylalaninamide(Non-covalent)

NSY.1: 28 residues within 4Å: Chain A: Q.19, G.20, Q.21, C.22, G.23, C.25, W.26, G.61, E.63, N.66, G.67, G.68, L.69, M.70, Y.72, A.135, A.138, G.139, H.140, E.141, L.144, F.145, M.161, D.162, H.163, G.164, W.189, A.214 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Q.21, A:E.63, A:L.69, A:L.69, A:Y.72, A:A.135, A:E.141, A:L.144, A:F.145, A:H.163, A:A.214 Hydrogen bonds: A:Q.19, A:G.68, A:G.68, A:A.138, A:D.162, A:D.162 Water bridges: A:G.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shenoy, R.T. et al., A combined crystallographic and molecular dynamics study of cathepsin L retrobinding inhibitors. J.Med.Chem. (2009)

Release Date

2009-10-20

Peptides

Cathepsin L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Cathepsin L1

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