SMTL ID : 5f02.1

CATHEPSIN L IN COMPLEX WITH (2S,4R)-4-(2-Chloro-4-methoxy-benzenesulfonyl)-1-[3-(5-chloro-pyridin-2-yl)-azetidine-3-carbonyl]-pyrrolidine-2-carboxylic acid (1-cyano-cyclopropyl)-amide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: N.18, Q.19, G.20, Q.21, S.188, W.189 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.18, A:G.20 Water bridges: A:Q.19, A:Q.19, A:Q.21, A:W.189

1 x 5T9: (2~{S},4~{R})-4-[(2-chloranyl-4-methoxy-phenyl)-bis(oxidanyl)-$l^{4}-sulfanyl]-1-[3-(5-chloranylpyridin-2-yl)azetidin-3-yl]carbonyl-~{N}-[1-(iminomethyl)cyclopropyl]pyrrolidine-2-carboxamide(Covalent)

5T9.2: 20 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, G.61, N.62, E.63, N.66, G.67, G.68, L.69, M.70, Y.72, A.135, M.161, D.162, H.163, G.164, A.214 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.69, A:A.214 Hydrogen bonds: A:Q.19, A:C.25, A:G.68, A:D.162 Water bridges: A:C.22, A:W.189 Halogen bonds: A:G.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhn, B. et al., A Real-World Perspective on Molecular Design. J.Med.Chem. (2016)

Release Date

2016-02-24

Peptides

Cathepsin L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin L1

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