SMTL ID : 3a2o.1

Crystal Structure of HIV-1 Protease Complexed with KNI-1689

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.88 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain B: T.12, I.13, K.14, L.19, E.65, A.67, G.68 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.12, B:G.68

1 x KNJ: (4R)-3-[(2S,3S)-3-{[(4-amino-2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-5,5-dimethyl-N-(2-methylprop -2-en-1-yl)-1,3-thiazolidine-4-carboxamide(Non-covalent)

KNJ.2: 31 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 25 PLIP interactions: 14 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:P.81, A:V.82, A:I.84, B:L.23, B:D.30, B:V.32, B:I.47, B:I.47, B:V.82 Hydrogen bonds: A:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:K.45 Water bridges: A:G.27, A:G.27, A:G.48, A:I.50, A:I.50, A:I.50, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hidaka, K. et al., Small-sized human immunodeficiency virus type-1 protease inhibitors containing allophenylnorstatine to explore the S2' pocket. J.Med.Chem. (2009)

Release Date

2010-03-02

Peptides

PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEASE

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