SMTL ID : 3b72.1

Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: S.42, G.44, Q.139, I.142 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: Y.41 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: S.78, C.82, N.83, S.90, R.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.90, A:R.91

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 6 residues within 4Å: Chain A: Q.75, I.76, N.77, W.81, A.125, W.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.75, A:N.77 MPD.5: 6 residues within 4Å: Chain A: K.51, F.52, E.53, S.54, N.55, R.132 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.52, A:N.55 Hydrogen bonds: A:R.132 Water bridges: A:R.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michaux, C. et al., Protecting role of cosolvents in protein denaturation by SDS: a structural study. Bmc Struct.Biol. (2008)

Release Date

2008-09-09

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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