SMTL ID : 3cy2.1

Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a beta carboline ligand II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: K.68, L.121, D.187 Ligands: MB9.2 Ligand excluded by PLIP

1 x MB9: (4R)-7-chloro-9-methyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile(Non-covalent)

MB9.2: 13 residues within 4Å: Chain A: L.45, G.46, F.50, V.53, A.66, K.68, R.123, E.172, N.173, L.175, I.186, D.187 Ligands: CL.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.50, A:V.53, A:A.66, A:L.175, A:I.186

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: H.220, R.222, S.223, P.276 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.220, A:R.222, A:S.223, A:S.223 Water bridges: A:H.220, A:R.222, A:A.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, K. et al., 7,8-Dichloro-1-oxo-beta-carbolines as a Versatile Scaffold for the Development of Potent and Selective Kinase Inhibitors with Unusual Binding Modes. J.Med.Chem. (2012)

Release Date

2008-07-15

Peptides

Proto-oncogene serine/threonine-protein kinase Pim-1, Isoform 2: A
Pimtide peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proto-oncogene serine/threonine-protein kinase Pim-1, Isoform 2

Pimtide peptide

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