- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: R.157
- Chain B: A.48, D.52, Q.134
- Ligands: UMP.6
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.52, A:R.157
- Water bridges: B:G.44, B:D.52
EDO.5: 3 residues within 4Å:- Chain A: K.139
- Chain B: K.139
- Chain C: K.139
5 PLIP interactions:2 interactions with chain C, 2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: C:K.139, C:K.139, B:K.139, B:K.139
- Water bridges: A:K.139
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.7: 11 residues within 4Å:- Chain A: V.103, D.105
- Chain B: R.157
- Chain C: T.42, K.43, G.44, A.48, G.50, D.52, Q.134
- Ligands: UMP.1
7 PLIP interactions:5 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: C:T.42, C:G.44, C:D.52, C:Q.134, A:V.103, B:R.157
- Water bridges: C:G.50
PEG.8: 4 residues within 4Å:- Chain A: D.150
- Chain C: Q.32, L.33, R.34
1 PLIP interactions:1 interactions with chain C- Water bridges: C:L.33
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2008-11-11
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2008-11-11
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C