SMTL ID : 3ijg.1

Macrophage Migration Inhibitory Factor (MIF) Bound to the (R)-Stereoisomer of AV1013

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: M.101, N.102, N.105 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: S.52, S.53, E.54 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: F.18, L.19 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: A.70, R.73 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: M.101, N.102, N.105 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: R.73 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: M.101, N.102, N.105 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP

1 x AVR: (2R)-2-amino-1-[2-(1-methylethyl)pyrazolo[1,5-a]pyridin-3-yl]propan-1-one(Non-covalent)

AVR.9: 5 residues within 4Å: Chain B: Y.95 Chain C: Q.35, Y.36, W.108, F.113 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:Q.35, C:Y.36, C:W.108, C:F.113, C:F.113 Hydrogen bonds: C:Y.36 pi-Stacking: C:Y.36, C:Y.36, C:W.108, C:W.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, Y. et al., Allosteric inhibition of macrophage migration inhibitory factor revealed by ibudilast. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-16

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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