SMTL ID : 3l0n.1

Human orotidyl-5'-monophosphate decarboxylase in complex with 6-mercapto-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

2 x S5P: 6-sulfanyluridine-5'-phosphate(Non-covalent)

S5P.1: 19 residues within 4Å: Chain A: S.37, D.39, K.61, H.63, D.92, K.94, M.151, S.152, I.181, P.197, Q.210, Y.212, I.228, V.229, G.230, R.231 Chain B: D.97, I.98, T.101 17 PLIP interactions: 2 interactions with chain B, 15 interactions with chain A Hydrogen bonds: B:D.97, B:T.101, A:S.37, A:K.61, A:K.94, A:S.152, A:S.152, A:S.152, A:Q.210, A:G.230, A:R.231 Hydrophobic interactions: A:I.181, A:P.197 Water bridges: A:G.198, A:V.199, A:G.232 Salt bridges: A:R.231 S5P.2: 18 residues within 4Å: Chain A: D.97, I.98, T.101 Chain B: S.37, D.39, K.61, H.63, D.92, K.94, M.151, S.152, I.181, P.197, Q.210, Y.212, I.228, G.230, R.231 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.181, B:P.197 Hydrogen bonds: B:S.37, B:K.61, B:K.94, B:S.152, B:S.152, B:S.152, B:Q.210, B:Y.212, B:G.230, B:R.231, A:D.97, A:T.101 Water bridges: B:G.198, B:G.198 Salt bridges: B:R.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heinrich, D. et al., Lys314 is a nucleophile in non-classical reactions of orotidine-5'-monophosphate decarboxylase. Chemistry (2009)

Release Date

2010-01-26

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uridine 5'-monophosphate synthase

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