SMTL ID : 3o7a.1

Crystal structure of PHF13 in complex with H3K4me3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.36, K.37, S.38 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.36, A:K.37, A:S.38, A:S.38 Water bridges: A:I.35, A:S.38

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.7, C.9, H.29, C.32 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.9, A:H.29, A:C.32 ZN.3: 4 residues within 4Å: Chain A: C.21, C.24, C.46, C.49 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.24, A:C.46, A:C.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, H.R. et al., PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3. Elife (2016)

Release Date

2010-10-06

Peptides

PHD finger protein 13 variant: A
H3K4ME3 HISTONE 11MER-PEPTIDE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PHD finger protein 13 variant

H3K4ME3 HISTONE 11MER-PEPTIDE

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