SMTL ID : 5tdr.1

Set3 PHD finger in complex with histone H3K4me2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

hetero-oligomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.20, C.23, C.46, C.49 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:C.46, A:C.49 ZN.2: 5 residues within 4Å: Chain A: C.6, C.8, H.28, C.31, Q.63 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.8, A:H.28, A:C.31

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: T.5, C.6, D.9, N.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.6, A:D.9, A:N.11 NA.4: 5 residues within 4Å: Chain A: D.14, F.16, H.28, A.29, I.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.14, A:A.29, A:I.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gatchalian, J. et al., Structural Insight into Recognition of Methylated Histone H3K4 by Set3. J. Mol. Biol. (2017)

Release Date

2016-11-02

Peptides

SET domain-containing protein 3: A
Histone H3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SET domain-containing protein 3

Histone H3

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